Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AGGF1P1-201ENST00000509500 2073 ntBASIC13.93□□□□□ -0.18
CDH12P55289 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.93□□□□□ -0.18
CDH12P55289 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
CDH12P55289 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.93□□□□□ -0.18
CDH12P55289 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.93□□□□□ -0.18
CDH12P55289 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.93□□□□□ -0.18
CDH12P55289 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
CDH12P55289 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.93□□□□□ -0.18
CDH12P55289 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.93□□□□□ -0.18
CDH12P55289 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
CDH12P55289 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH12P55289 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH12P55289 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.92□□□□□ -0.18
CDH12P55289 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 MRPS18AP1-201ENST00000414458 589 ntBASIC13.92□□□□□ -0.18
CDH12P55289 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 DOC2GP-202ENST00000514950 1163 ntBASIC13.92□□□□□ -0.18
CDH12P55289 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.18
CDH12P55289 AC023310.3-201ENST00000557027 670 ntBASIC13.92□□□□□ -0.18
CDH12P55289 AC100756.1-201ENST00000562736 682 ntBASIC13.92□□□□□ -0.18
CDH12P55289 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 AC138749.3-201ENST00000567691 622 ntBASIC13.92□□□□□ -0.18
CDH12P55289 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.92□□□□□ -0.18
CDH12P55289 AC116165.1-201ENST00000611806 668 ntBASIC13.92□□□□□ -0.18
CDH12P55289 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.92□□□□□ -0.18
CDH12P55289 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.92□□□□□ -0.18
CDH12P55289 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.92□□□□□ -0.18
CDH12P55289 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH12P55289 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CDH12P55289 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 AC089987.1-201ENST00000551654 2209 ntBASIC13.92□□□□□ -0.18
CDH12P55289 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CDH12P55289 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH12P55289 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.92□□□□□ -0.18
CDH12P55289 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CDH12P55289 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
CDH12P55289 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH12P55289 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.91□□□□□ -0.18
CDH12P55289 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
CDH12P55289 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CDH12P55289 AC093525.8-201ENST00000624099 1342 ntBASIC13.91□□□□□ -0.18
CDH12P55289 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH12P55289 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH12P55289 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH12P55289 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CDH12P55289 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH12P55289 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CDH12P55289 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH12P55289 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH12P55289 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH12P55289 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH12P55289 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH12P55289 AL031595.1-201ENST00000623969 4709 ntBASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms