Protein–RNA interactions for Protein: P0CG48

UBC, Polyubiquitin-C, humanhuman

Known RBP Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBCP0CG48 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.12□□□□□ -0.31
UBCP0CG48 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.12□□□□□ -0.31
UBCP0CG48 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 MIR1233-2-201ENST00000408138 82 ntBASIC13.12□□□□□ -0.31
UBCP0CG48 MIR1233-1-201ENST00000408722 82 ntBASIC13.12□□□□□ -0.31
UBCP0CG48 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
UBCP0CG48 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.12□□□□□ -0.31
UBCP0CG48 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.12□□□□□ -0.31
UBCP0CG48 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.12□□□□□ -0.31
UBCP0CG48 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
UBCP0CG48 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 BX539320.1-201ENST00000623759 877 ntBASIC13.12□□□□□ -0.31
UBCP0CG48 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.12□□□□□ -0.31
UBCP0CG48 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.12□□□□□ -0.31
UBCP0CG48 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBCP0CG48 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
UBCP0CG48 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
UBCP0CG48 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.11□□□□□ -0.31
UBCP0CG48 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 VDAC1P7-201ENST00000462417 847 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 SPDYE18-201ENST00000510091 1050 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.11□□□□□ -0.31
UBCP0CG48 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
UBCP0CG48 AC009407.1-201ENST00000568958 598 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
UBCP0CG48 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 AC093028.1-201ENST00000622998 982 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 AL603764.1-201ENST00000636452 321 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 PRSS30P-206ENST00000641773 873 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 COL6A4P2-202ENST00000504443 2753 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 KRT8P14-201ENST00000414254 1442 ntBASIC13.11□□□□□ -0.31
UBCP0CG48 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
UBCP0CG48 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.11□□□□□ -0.31
UBCP0CG48 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
UBCP0CG48 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.1□□□□□ -0.31
UBCP0CG48 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBCP0CG48 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
UBCP0CG48 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.1□□□□□ -0.31
UBCP0CG48 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
UBCP0CG48 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBCP0CG48 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.1□□□□□ -0.31
UBCP0CG48 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
UBCP0CG48 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
UBCP0CG48 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
UBCP0CG48 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.1□□□□□ -0.31
UBCP0CG48 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms