Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
HMGB1P09429 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB1P09429 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB1P09429 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.39
HMGB1P09429 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.39
HMGB1P09429 AC152010.1-201ENST00000415779 2006 ntBASIC17.52■□□□□ 0.39
HMGB1P09429 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
HMGB1P09429 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.52■□□□□ 0.39
HMGB1P09429 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB1P09429 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB1P09429 AL136379.1-201ENST00000623471 2642 ntBASIC17.51■□□□□ 0.39
HMGB1P09429 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB1P09429 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGB1P09429 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HMGB1P09429 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
HMGB1P09429 KHSRPP1-201ENST00000427983 1768 ntBASIC17.51■□□□□ 0.39
HMGB1P09429 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 AC009093.2-202ENST00000620513 2079 ntBASIC17.51■□□□□ 0.39
HMGB1P09429 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGB1P09429 AC078819.1-201ENST00000547454 765 ntBASIC17.51■□□□□ 0.39
HMGB1P09429 AC012085.1-201ENST00000548270 765 ntBASIC17.51■□□□□ 0.39
HMGB1P09429 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.51■□□□□ 0.39
HMGB1P09429 AC106886.1-201ENST00000568660 600 ntBASIC17.51■□□□□ 0.39
HMGB1P09429 RN7SL713P-201ENST00000582127 302 ntBASIC17.51■□□□□ 0.39
HMGB1P09429 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGB1P09429 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGB1P09429 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGB1P09429 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HMGB1P09429 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB1P09429 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGB1P09429 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
HMGB1P09429 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGB1P09429 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB1P09429 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGB1P09429 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB1P09429 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
HMGB1P09429 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 AP003171.2-201ENST00000528208 925 ntBASIC17.5■□□□□ 0.39
HMGB1P09429 AP000812.2-201ENST00000538934 718 ntBASIC17.5■□□□□ 0.39
HMGB1P09429 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 AC008825.2-201ENST00000603374 718 ntBASIC17.5■□□□□ 0.39
HMGB1P09429 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 AL354989.2-201ENST00000435838 1540 ntBASIC17.5■□□□□ 0.39
HMGB1P09429 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.5■□□□□ 0.39
HMGB1P09429 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGB1P09429 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB1P09429 GRK6P1-201ENST00000400595 1711 ntBASIC17.5■□□□□ 0.39
HMGB1P09429 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB1P09429 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms