Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AC007969.1-201ENST00000433675 447 ntBASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AC010328.2-201ENST00000597698 1111 ntBASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AL138725.1-201ENST00000407347 1314 ntBASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM39Q9HCM9 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 CNN2P10-201ENST00000443067 918 ntBASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 HOMER2P2-201ENST00000451621 847 ntBASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 AP003171.2-201ENST00000528208 925 ntBASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 AC138696.2-201ENST00000607376 223 ntBASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM39Q9HCM9 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 AC015656.1-201ENST00000624209 3578 ntBASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM39Q9HCM9 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms