Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 AC007541.1-201ENST00000570282 1469 ntBASIC11.42□□□□□ -0.58
HLA-DMBP28068 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC11.42□□□□□ -0.58
HLA-DMBP28068 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HLA-DMBP28068 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 AC010327.5-201ENST00000586923 3061 ntBASIC11.41□□□□□ -0.58
HLA-DMBP28068 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 METTL26-204ENST00000397665 558 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 AC026410.3-201ENST00000514280 936 ntBASIC11.41□□□□□ -0.58
HLA-DMBP28068 AC022447.6-201ENST00000515522 438 ntBASIC11.41□□□□□ -0.58
HLA-DMBP28068 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 TPRX2P-201ENST00000535362 881 ntBASIC11.41□□□□□ -0.58
HLA-DMBP28068 RBM7-207ENST00000544582 692 ntTSL 3 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 CDK4-206ENST00000549606 558 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 AL132655.2-201ENST00000596276 594 ntBASIC11.41□□□□□ -0.58
HLA-DMBP28068 CECR7-204ENST00000609932 568 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 AC012645.4-201ENST00000610691 1061 ntBASIC11.41□□□□□ -0.58
HLA-DMBP28068 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 KRT8P14-201ENST00000414254 1442 ntBASIC11.41□□□□□ -0.58
HLA-DMBP28068 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HLA-DMBP28068 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
HLA-DMBP28068 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms