Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 BX640514.1-201ENST00000583223 1918 ntBASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 MRPL37P1-201ENST00000592451 1337 ntBASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 MIR1202-201ENST00000408529 83 ntBASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 CTBP2P5-201ENST00000454986 1264 ntBASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 SNX29P1-201ENST00000548357 1007 ntBASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC19.1■□□□□ 0.65
SMC4Q9NTJ3 OR2I1P-210ENST00000642037 4691 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 BOLA2P3-201ENST00000404566 256 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 HILS1-202ENST00000545329 423 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 MIR4683-201ENST00000579659 81 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 AC073413.1-201ENST00000603927 732 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 RHOXF1P1-202ENST00000635473 501 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 AC026748.1-201ENST00000624349 3251 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 AGGF1P1-201ENST00000509500 2073 ntBASIC19.09■□□□□ 0.65
SMC4Q9NTJ3 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.65
SMC4Q9NTJ3 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms