Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 GRPEL2P1-201ENST00000453145 339 ntBASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 FAM86B3P-203ENST00000523992 854 ntBASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AP005264.5-201ENST00000590066 467 ntBASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 AC091769.1-201ENST00000619576 568 ntBASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK3Q9BYB0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 LINC00115-201ENST00000473798 1317 ntBASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 RN7SL582P-201ENST00000491078 279 ntBASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
SHANK3Q9BYB0 PDXDC2P-206ENST00000534700 1315 ntBASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 SNX15-201ENST00000352068 771 ntTSL 5 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 CISD2-202ENST00000503643 808 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 AC004686.1-201ENST00000605113 538 ntBASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 AL139339.2-201ENST00000608063 657 ntBASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
SHANK3Q9BYB0 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 AL365181.1-201ENST00000564032 1828 ntBASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 MYADML-201ENST00000474610 2147 ntBASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 ZNF436-AS1-201ENST00000335648 2547 ntBASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHANK3Q9BYB0 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 RN7SL767P-201ENST00000493013 295 ntBASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 AC023968.2-201ENST00000560593 1049 ntBASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHANK3Q9BYB0 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms