Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 CNN2P2-201ENST00000443536 909 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 CNN2P3-201ENST00000450201 906 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 AC069120.2-201ENST00000524091 540 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 AC092865.5-201ENST00000545435 363 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 SNHG9-202ENST00000564014 471 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 AC092337.1-201ENST00000568699 1129 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 AL136317.3-201ENST00000618497 906 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 KRT8P14-201ENST00000414254 1442 ntBASIC14.39□□□□□ -0.11
VPS33AQ96AX1 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS33AQ96AX1 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 KLF2P3-201ENST00000451977 1087 ntBASIC14.38□□□□□ -0.11
VPS33AQ96AX1 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 DMBT1P1-203ENST00000636837 4628 ntBASIC14.38□□□□□ -0.11
VPS33AQ96AX1 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.38□□□□□ -0.11
VPS33AQ96AX1 AL031595.1-201ENST00000623969 4709 ntBASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms