Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 AC004233.3-201ENST00000607794 1269 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 RNA5-8SN5-201ENST00000619471 153 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 AL109936.8-201ENST00000641772 604 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 COL6A4P2-202ENST00000504443 2753 ntBASIC13.35□□□□□ -0.27
LRRC28Q86X40 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.35□□□□□ -0.27
LRRC28Q86X40 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LRRC28Q86X40 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 KRT8P22-201ENST00000562317 1415 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 PIN1P1-201ENST00000412108 996 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AC190387.1-201ENST00000551683 408 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AC025048.3-201ENST00000590609 569 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 AC005702.4-201ENST00000618393 416 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 REXO1L4P-201ENST00000605109 1937 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AC130686.1-201ENST00000622936 2466 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LRRC28Q86X40 AL356585.2-201ENST00000625078 2396 ntBASIC13.34□□□□□ -0.27
LRRC28Q86X40 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
LRRC28Q86X40 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
LRRC28Q86X40 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
LRRC28Q86X40 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
LRRC28Q86X40 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
LRRC28Q86X40 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.33□□□□□ -0.27
LRRC28Q86X40 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
LRRC28Q86X40 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.33□□□□□ -0.28
LRRC28Q86X40 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.33□□□□□ -0.28
LRRC28Q86X40 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRRC28Q86X40 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.33□□□□□ -0.28
LRRC28Q86X40 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LRRC28Q86X40 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms