Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 AHCYP4-201ENST00000419201 1315 ntBASIC12.11□□□□□ -0.47
LMO4P61968 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
LMO4P61968 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.11□□□□□ -0.47
LMO4P61968 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.11□□□□□ -0.47
LMO4P61968 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.11□□□□□ -0.47
LMO4P61968 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
LMO4P61968 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.11□□□□□ -0.47
LMO4P61968 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.11□□□□□ -0.47
LMO4P61968 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
LMO4P61968 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 LINC00528-201ENST00000600723 2160 ntBASIC12.11□□□□□ -0.47
LMO4P61968 AC018442.1-201ENST00000421439 2061 ntBASIC12.11□□□□□ -0.47
LMO4P61968 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
LMO4P61968 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC12.11□□□□□ -0.47
LMO4P61968 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC12.11□□□□□ -0.47
LMO4P61968 RN7SL258P-201ENST00000478664 300 ntBASIC12.11□□□□□ -0.47
LMO4P61968 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 MIR4706-201ENST00000582134 82 ntBASIC12.11□□□□□ -0.47
LMO4P61968 MIR3188-201ENST00000583494 85 ntBASIC12.11□□□□□ -0.47
LMO4P61968 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
LMO4P61968 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.11□□□□□ -0.47
LMO4P61968 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 AC006504.5-208ENST00000588784 2401 ntBASIC12.11□□□□□ -0.47
LMO4P61968 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC12.11□□□□□ -0.47
LMO4P61968 TBC1D3J-201ENST00000620719 1426 ntBASIC12.11□□□□□ -0.47
LMO4P61968 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
LMO4P61968 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.11□□□□□ -0.47
LMO4P61968 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
LMO4P61968 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 KHSRPP1-201ENST00000427983 1768 ntBASIC12.1□□□□□ -0.47
LMO4P61968 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC12.1□□□□□ -0.47
LMO4P61968 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC12.1□□□□□ -0.47
LMO4P61968 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
LMO4P61968 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
LMO4P61968 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
LMO4P61968 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.1□□□□□ -0.47
LMO4P61968 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms