Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
HOXA1P49639 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 OS9-218ENST00000551035 2246 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
HOXA1P49639 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
HOXA1P49639 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC12.48□□□□□ -0.41
HOXA1P49639 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC12.48□□□□□ -0.41
HOXA1P49639 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.48□□□□□ -0.41
HOXA1P49639 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 LINC01225-203ENST00000563550 1244 ntBASIC12.48□□□□□ -0.41
HOXA1P49639 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
HOXA1P49639 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 AC152010.1-201ENST00000415779 2006 ntBASIC12.48□□□□□ -0.41
HOXA1P49639 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC12.48□□□□□ -0.41
HOXA1P49639 GRN-214ENST00000589265 1632 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HOXA1P49639 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HOXA1P49639 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 AC020658.7-201ENST00000624274 2442 ntBASIC12.47□□□□□ -0.41
HOXA1P49639 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
HOXA1P49639 MIR940-201ENST00000401276 94 ntBASIC12.47□□□□□ -0.41
HOXA1P49639 AC069335.1-201ENST00000489972 472 ntBASIC12.47□□□□□ -0.41
HOXA1P49639 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC12.47□□□□□ -0.41
HOXA1P49639 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.47□□□□□ -0.41
HOXA1P49639 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC12.47□□□□□ -0.41
HOXA1P49639 AC040169.1-201ENST00000565382 521 ntBASIC12.47□□□□□ -0.41
HOXA1P49639 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.47□□□□□ -0.41
HOXA1P49639 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC12.47□□□□□ -0.41
HOXA1P49639 BX640515.1-201ENST00000617215 977 ntBASIC12.47□□□□□ -0.41
HOXA1P49639 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.47□□□□□ -0.41
HOXA1P49639 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 AL365181.3-201ENST00000605886 3222 ntBASIC12.47□□□□□ -0.41
HOXA1P49639 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
HOXA1P49639 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.47□□□□□ -0.41
HOXA1P49639 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms