Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 FN1-213ENST00000456923 3720 ntTSL 27.82□□□□□ -1.162e-58■□□□□ 9.3
YBX3P16989 FN1-224ENST00000492816 9171 ntTSL 55.41□□□□□ -1.542e-58■□□□□ 9.3
YBX3P16989 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.38e-8■□□□□ 9.3
YBX3P16989 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC23.15■■□□□ 1.38e-8■□□□□ 9.3
YBX3P16989 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC23.15■■□□□ 1.38e-8■□□□□ 9.3
YBX3P16989 DGUOK-203ENST00000418996 703 ntTSL 1 (best)20.12■□□□□ 0.818e-8■□□□□ 9.3
YBX3P16989 DGUOK-205ENST00000462685 715 ntTSL 319.32■□□□□ 0.688e-8■□□□□ 9.3
YBX3P16989 HDLBP-233ENST00000470710 578 ntTSL 210.35□□□□□ -0.755e-12■□□□□ 9.3
YBX3P16989 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.126e-7■□□□□ 9.3
YBX3P16989 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.86□□□□□ -0.196e-7■□□□□ 9.3
YBX3P16989 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC8.59□□□□□ -1.036e-7■□□□□ 9.3
YBX3P16989 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.69□□□□□ -1.986e-7■□□□□ 9.3
YBX3P16989 UROD-206ENST00000461035 486 ntTSL 1 (best)10.9□□□□□ -0.663e-11■□□□□ 9.3
YBX3P16989 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.413e-6■□□□□ 9.3
YBX3P16989 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.81■■□□□ 1.081e-22■□□□□ 9.3
YBX3P16989 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.52■■□□□ 1.041e-22■□□□□ 9.3
YBX3P16989 BSG-216ENST00000618112 769 ntTSL 220.91■□□□□ 0.941e-22■□□□□ 9.3
YBX3P16989 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.02■□□□□ 0.791e-22■□□□□ 9.3
YBX3P16989 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.02■□□□□ 0.791e-22■□□□□ 9.3
YBX3P16989 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.721e-22■□□□□ 9.3
YBX3P16989 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.39■□□□□ 0.691e-22■□□□□ 9.3
YBX3P16989 BSG-205ENST00000571735 2155 ntTSL 217.44■□□□□ 0.381e-22■□□□□ 9.3
YBX3P16989 TOMM22-202ENST00000492561 782 ntTSL 223.68■■□□□ 1.385e-12■□□□□ 9.3
YBX3P16989 PTBP1-211ENST00000587094 273 ntTSL 315.61■□□□□ 0.095e-12■□□□□ 9.3
YBX3P16989 NT5DC2-207ENST00000469616 453 ntTSL 27.77□□□□□ -1.175e-12■□□□□ 9.3
YBX3P16989 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.2■□□□□ 0.54e-11■□□□□ 9.3
YBX3P16989 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.156e-6■□□□□ 9.3
YBX3P16989 ELOVL5-205ENST00000485336 761 ntTSL 514.3□□□□□ -0.129e-10■□□□□ 9.3
YBX3P16989 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.799e-10■□□□□ 9.3
YBX3P16989 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC10.03□□□□□ -0.89e-10■□□□□ 9.3
YBX3P16989 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.15□□□□□ -1.279e-10■□□□□ 9.3
YBX3P16989 SMPD4-219ENST00000491128 2570 ntTSL 1 (best)16.14■□□□□ 0.176e-7■□□□□ 9.3
YBX3P16989 SMPD4-218ENST00000482171 4298 ntTSL 211.61□□□□□ -0.556e-7■□□□□ 9.3
YBX3P16989 EIF3B-209ENST00000468250 602 ntTSL 210.36□□□□□ -0.754e-11■□□□□ 9.3
YBX3P16989 EIF3B-205ENST00000463026 633 ntTSL 29.64□□□□□ -0.874e-11■□□□□ 9.3
YBX3P16989 EIF3B-206ENST00000463229 552 ntTSL 55.73□□□□□ -1.494e-11■□□□□ 9.3
YBX3P16989 EIF5A-210ENST00000575001 609 ntTSL 232.13■■■□□ 2.736e-14■□□□□ 9.3
YBX3P16989 EIF5A-203ENST00000355068 923 ntTSL 27.83□□□□□ -1.166e-14■□□□□ 9.3
YBX3P16989 UBE2D2-204ENST00000505007 1170 ntTSL 325.58■■□□□ 1.691e-6■□□□□ 9.3
YBX3P16989 UBE2D2-208ENST00000511725 656 ntTSL 2 BASIC13.25□□□□□ -0.291e-6■□□□□ 9.3
YBX3P16989 UBE2D2-206ENST00000510470 256 ntTSL 212.18□□□□□ -0.461e-6■□□□□ 9.3
YBX3P16989 UBE2D2-207ENST00000511691 543 ntTSL 28.84□□□□□ -0.991e-6■□□□□ 9.3
YBX3P16989 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC6.47□□□□□ -1.371e-6■□□□□ 9.3
YBX3P16989 TRIM28-206ENST00000595974 665 ntTSL 321.22■□□□□ 0.992e-27■□□□□ 9.3
YBX3P16989 TRIM28-213ENST00000598355 714 ntTSL 221.06■□□□□ 0.962e-27■□□□□ 9.3
YBX3P16989 TRIM28-207ENST00000597136 1552 ntTSL 219.03■□□□□ 0.642e-27■□□□□ 9.3
YBX3P16989 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.034e-10■□□□□ 9.3
YBX3P16989 IGSF1-201ENST00000361420 4378 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.724e-10■□□□□ 9.3
YBX3P16989 IGSF1-205ENST00000370904 5413 ntAPPRIS ALT2 TSL 2 BASIC9.32□□□□□ -0.924e-10■□□□□ 9.3
YBX3P16989 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.944e-10■□□□□ 9.3
YBX3P16989 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.04■■□□□ 1.122e-10■□□□□ 9.3
YBX3P16989 LSM14A-205ENST00000586157 944 ntTSL 517.97■□□□□ 0.472e-10■□□□□ 9.3
YBX3P16989 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.062e-10■□□□□ 9.3
YBX3P16989 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.092e-10■□□□□ 9.3
YBX3P16989 TNNT1-214ENST00000589745 529 ntTSL 219.95■□□□□ 0.787e-9■□□□□ 9.3
YBX3P16989 RFC5-205ENST00000472603 681 ntTSL 216.53■□□□□ 0.247e-9■□□□□ 9.3
YBX3P16989 TNNT1-206ENST00000586649 340 ntTSL 511.56□□□□□ -0.567e-9■□□□□ 9.3
YBX3P16989 GGA2-215ENST00000569189 586 ntTSL 531.98■■■□□ 2.718e-9■□□□□ 9.2
YBX3P16989 GGA2-203ENST00000562944 388 ntTSL 530.81■■■□□ 2.528e-9■□□□□ 9.2
YBX3P16989 GGA2-206ENST00000566547 603 ntTSL 230.47■■■□□ 2.478e-9■□□□□ 9.2
YBX3P16989 GGA2-204ENST00000563047 366 ntTSL 529.23■■■□□ 2.278e-9■□□□□ 9.2
YBX3P16989 GGA2-205ENST00000563494 553 ntTSL 528.51■■■□□ 2.158e-9■□□□□ 9.2
YBX3P16989 GGA2-212ENST00000568799 1403 ntTSL 527.93■■■□□ 2.068e-9■□□□□ 9.2
YBX3P16989 GGA2-202ENST00000562117 387 ntTSL 515.95■□□□□ 0.148e-9■□□□□ 9.2
YBX3P16989 GGA2-207ENST00000566651 332 ntTSL 39.99□□□□□ -0.818e-9■□□□□ 9.2
YBX3P16989 GGA2-217ENST00000570111 563 ntTSL 59.6□□□□□ -0.878e-9■□□□□ 9.2
YBX3P16989 GGA2-216ENST00000569300 572 ntTSL 46.95□□□□□ -1.38e-9■□□□□ 9.2
YBX3P16989 SARAF-211ENST00000522794 808 ntTSL 59.64□□□□□ -0.872e-8■□□□□ 9.2
YBX3P16989 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC22.21■■□□□ 1.157e-9■□□□□ 9.2
YBX3P16989 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.827e-9■□□□□ 9.2
YBX3P16989 FKBP4-202ENST00000538622 572 ntTSL 56.8□□□□□ -1.327e-9■□□□□ 9.2
YBX3P16989 RRP36-202ENST00000607394 528 ntTSL 26.93□□□□□ -1.32e-6■□□□□ 9.2
YBX3P16989 CTDSP2-208ENST00000552294 436 ntTSL 59.94□□□□□ -0.822e-12■□□□□ 9.2
YBX3P16989 RCC2-203ENST00000474892 783 ntTSL 319.32■□□□□ 0.683e-10■□□□□ 9.2
YBX3P16989 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.35■■□□□ 1.975e-6■□□□□ 9.2
YBX3P16989 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.468e-7■□□□□ 9.2
YBX3P16989 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.385e-8■□□□□ 9.2
YBX3P16989 CDK16-222ENST00000523699 675 ntTSL 521.24■□□□□ 0.998e-7■□□□□ 9.2
YBX3P16989 MAP3K4-208ENST00000536852 2526 ntTSL 211.71□□□□□ -0.539e-9■□□□□ 9.2
YBX3P16989 ALDOA-214ENST00000564688 613 ntTSL 514.64□□□□□ -0.071e-323■□□□□ 9.2
YBX3P16989 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.722e-7■□□□□ 9.2
YBX3P16989 CDC34-202ENST00000586283 1147 ntTSL 323.03■■□□□ 1.282e-7■□□□□ 9.2
YBX3P16989 DNM2-222ENST00000593220 561 ntTSL 320.14■□□□□ 0.812e-8■□□□□ 9.2
YBX3P16989 DNM2-210ENST00000587830 868 ntTSL 514.67□□□□□ -0.062e-8■□□□□ 9.2
YBX3P16989 KIF13A-206ENST00000502297 4009 ntTSL 58.38□□□□□ -1.072e-8■□□□□ 9.2
YBX3P16989 TAF7-203ENST00000624761 603 ntTSL 424.14■■□□□ 1.454e-9■□□□□ 9.2
YBX3P16989 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.81■■■□□ 2.361e-8■□□□□ 9.2
YBX3P16989 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC28.87■■■□□ 2.211e-8■□□□□ 9.2
YBX3P16989 PPP1CC-204ENST00000546933 2154 ntTSL 3 BASIC13.45□□□□□ -0.261e-8■□□□□ 9.2
YBX3P16989 ANPEP-207ENST00000560028 582 ntTSL 316.72■□□□□ 0.276e-8■□□□□ 9.2
YBX3P16989 IGF1R-209ENST00000559582 567 ntTSL 412.78□□□□□ -0.366e-8■□□□□ 9.2
YBX3P16989 CS-232ENST00000552331 526 ntTSL 24.45□□□□□ -1.72e-21■□□□□ 9.2
YBX3P16989 AK2-202ENST00000373449 3586 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.642e-13■□□□□ 9.2
YBX3P16989 AK2-215ENST00000629371 3576 ntTSL 3 BASIC10.7□□□□□ -0.72e-13■□□□□ 9.2
YBX3P16989 ATP13A3-208ENST00000485194 586 ntTSL 56.94□□□□□ -1.32e-13■□□□□ 9.2
YBX3P16989 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.77□□□□□ -1.652e-13■□□□□ 9.2
YBX3P16989 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.82e-13■□□□□ 9.2
YBX3P16989 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.072e-13■□□□□ 9.2
YBX3P16989 HIST1H2BJ-202ENST00000606923 408 ntTSL 39.77□□□□□ -0.851e-21■□□□□ 9.2
YBX3P16989 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.48■□□□□ 0.552e-8■□□□□ 9.2
Retrieved 100 of 29,075 protein–RNA pairs in 120.4 ms