RNA–Protein interactions for RNA: ENST00000485194.1

ATP13A3-208, Transcript of ATPase 13A3, humanhuman

TSL 5

Gene ATP13A3, Length 586 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP13A3-208ENST00000485194 AEBP2Q6ZN18 517 aaPredicted RBP24.47■■□□□ 1.51
ATP13A3-208ENST00000485194 CHIC1Q5VXU3 224 aa23.39■■□□□ 1.33
ATP13A3-208ENST00000485194 SENP3Q9H4L4 574 aaPredicted RBP20.93■□□□□ 0.94
ATP13A3-208ENST00000485194 PHF23Q9BUL5 403 aaPredicted RBP20.63■□□□□ 0.89
ATP13A3-208ENST00000485194 FOXD1Q16676 465 aa19.61■□□□□ 0.73
ATP13A3-208ENST00000485194 PLPPR3Q6T4P5 718 aa19.19■□□□□ 0.66
ATP13A3-208ENST00000485194 POTEDQ86YR6 584 aa19.06■□□□□ 0.64
ATP13A3-208ENST00000485194 MSH5O43196 834 aa18.53■□□□□ 0.56
ATP13A3-208ENST00000485194 PIAS4Q8N2W9 510 aaPredicted RBP18.17■□□□□ 0.5
ATP13A3-208ENST00000485194 ADRA2BP18089 450 aa18.12■□□□□ 0.49
ATP13A3-208ENST00000485194 PPP6R1Q9UPN7 881 aa18.06■□□□□ 0.48
ATP13A3-208ENST00000485194 PPP4R3CPQ6ZMV5 832 aa16.94■□□□□ 0.3
ATP13A3-208ENST00000485194 KCNA4P22459 653 aa16.85■□□□□ 0.29
ATP13A3-208ENST00000485194 SCAF1Q9H7N4 1312 aaKnown RBP16.67■□□□□ 0.26
ATP13A3-208ENST00000485194 NCBP3Q53F19 620 aaKnown RBP16.65■□□□□ 0.26
ATP13A3-208ENST00000485194 MAPK8IP2Q13387 824 aaPredicted RBP16.58■□□□□ 0.24
ATP13A3-208ENST00000485194 DMRT2Q9Y5R5 561 aa16.51■□□□□ 0.23
ATP13A3-208ENST00000485194 CNKSR2Q8WXI2 1034 aa16.4■□□□□ 0.22
ATP13A3-208ENST00000485194 NPM3O75607 178 aaKnown RBP16.31■□□□□ 0.2
ATP13A3-208ENST00000485194 CACNB1Q02641 598 aaPredicted RBP16.29■□□□□ 0.2
ATP13A3-208ENST00000485194 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
ATP13A3-208ENST00000485194 EHMT2Q96KQ7 1210 aa16.09■□□□□ 0.17
ATP13A3-208ENST00000485194 RNF216Q9NWF9 866 aaPredicted RBP15.98■□□□□ 0.15
ATP13A3-208ENST00000485194 DCAF8L1A6NGE4 600 aa15.91■□□□□ 0.14
ATP13A3-208ENST00000485194 HOXD11P31277 338 aaPredicted RBP15.8■□□□□ 0.12
ATP13A3-208ENST00000485194 RNF39Q9H2S5 420 aa15.77■□□□□ 0.12
ATP13A3-208ENST00000485194 DNAJC5BQ9UF47 199 aa15.66■□□□□ 0.1
ATP13A3-208ENST00000485194 CSRNP3Q8WYN3 585 aa15.64■□□□□ 0.09
ATP13A3-208ENST00000485194 C1QBPQ07021 282 aaKnown RBP15.51■□□□□ 0.07
ATP13A3-208ENST00000485194 FOXD4L1Q9NU39 408 aa15.46■□□□□ 0.07
ATP13A3-208ENST00000485194 ZBTB22O15209 634 aa15.45■□□□□ 0.06
ATP13A3-208ENST00000485194 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
ATP13A3-208ENST00000485194 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.21■□□□□ 0.03
ATP13A3-208ENST00000485194 MYCNP04198 464 aaPredicted RBP15.1■□□□□ 0.01
ATP13A3-208ENST00000485194 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.89□□□□□ -0.03
ATP13A3-208ENST00000485194 HNRNPUL2Q1KMD3 747 aaKnown RBP14.89□□□□□ -0.03
ATP13A3-208ENST00000485194 U3KPZ7 1027 aaPredicted RBP14.88□□□□□ -0.03
ATP13A3-208ENST00000485194 ATXN8OSP0DMR3 200 aa14.87□□□□□ -0.03
ATP13A3-208ENST00000485194 POTEHQ6S545 545 aa14.83□□□□□ -0.04
ATP13A3-208ENST00000485194 SAMD1Q6SPF0 538 aaPredicted RBP14.82□□□□□ -0.04
ATP13A3-208ENST00000485194 APLP2Q06481 763 aa14.7□□□□□ -0.06
ATP13A3-208ENST00000485194 ATF5Q9Y2D1 282 aaPredicted RBP14.61□□□□□ -0.07
ATP13A3-208ENST00000485194 DSG3P32926 999 aa14.6□□□□□ -0.07
ATP13A3-208ENST00000485194 CAPN15O75808 1086 aa14.56□□□□□ -0.08
ATP13A3-208ENST00000485194 SPINK5Q9NQ38 1064 aaPredicted RBP14.56□□□□□ -0.08
ATP13A3-208ENST00000485194 ZNF219Q9P2Y4 722 aaPredicted RBP14.43□□□□□ -0.1
ATP13A3-208ENST00000485194 TRHP20396 242 aaPredicted RBP14.42□□□□□ -0.1
ATP13A3-208ENST00000485194 FKBP8Q14318 412 aa14.22□□□□□ -0.13
ATP13A3-208ENST00000485194 POLA2Q14181 598 aa14.21□□□□□ -0.13
ATP13A3-208ENST00000485194 ABCB7O75027 752 aa14.18□□□□□ -0.14
ATP13A3-208ENST00000485194 FBLN2P98095 1184 aa14.12□□□□□ -0.15
ATP13A3-208ENST00000485194 ZBTB12Q9Y330 459 aaPredicted RBP14.02□□□□□ -0.17
ATP13A3-208ENST00000485194 MKRN4PQ13434 485 aaPredicted RBP13.98□□□□□ -0.17
ATP13A3-208ENST00000485194 SPDYE4A6NLX3 237 aa13.91□□□□□ -0.18
ATP13A3-208ENST00000485194 RBM42Q9BTD8 480 aaKnown RBP13.91□□□□□ -0.18
ATP13A3-208ENST00000485194 CHRDL2Q6WN34 429 aa13.85□□□□□ -0.19
ATP13A3-208ENST00000485194 OSCARQ8IYS5 282 aa13.7□□□□□ -0.22
ATP13A3-208ENST00000485194 ZNF692Q9BU19 519 aaPredicted RBP13.67□□□□□ -0.22
ATP13A3-208ENST00000485194 FBXO3Q9UK99 471 aa13.66□□□□□ -0.22
ATP13A3-208ENST00000485194 SPDYE2BA6NHP3 402 aa13.63□□□□□ -0.23
ATP13A3-208ENST00000485194 SPDYE6P0CI01 402 aa13.63□□□□□ -0.23
ATP13A3-208ENST00000485194 SPDYE2Q495Y8 402 aa13.63□□□□□ -0.23
ATP13A3-208ENST00000485194 SP7Q8TDD2 431 aaPredicted RBP13.63□□□□□ -0.23
ATP13A3-208ENST00000485194 PROM2Q8N271 834 aa13.57□□□□□ -0.24
ATP13A3-208ENST00000485194 AKT1S1Q96B36 256 aa13.49□□□□□ -0.25
ATP13A3-208ENST00000485194 AMER1Q5JTC6 1135 aaPredicted RBP13.48□□□□□ -0.25
ATP13A3-208ENST00000485194 SSUH2Q9Y2M2 353 aa13.48□□□□□ -0.25
ATP13A3-208ENST00000485194 PABPN1Q86U42 306 aaKnown RBP eCLIP13.47□□□□□ -0.25
ATP13A3-208ENST00000485194 VASPP50552 380 aaPredicted RBP13.41□□□□□ -0.26
ATP13A3-208ENST00000485194 PIP4P2Q8N4L2 257 aa13.4□□□□□ -0.26
ATP13A3-208ENST00000485194 RTN4Q9NQC3 1192 aaKnown RBP13.39□□□□□ -0.27
ATP13A3-208ENST00000485194 REM2Q8IYK8 340 aaPredicted RBP13.38□□□□□ -0.27
ATP13A3-208ENST00000485194 HAX1O00165 279 aa13.35□□□□□ -0.27
ATP13A3-208ENST00000485194 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
ATP13A3-208ENST00000485194 PLCD3Q8N3E9 789 aa13.25□□□□□ -0.29
ATP13A3-208ENST00000485194 FXR2P51116 673 aaKnown RBP eCLIP13.24□□□□□ -0.29
ATP13A3-208ENST00000485194 PITPNM1O00562 1244 aa13.23□□□□□ -0.29
ATP13A3-208ENST00000485194 KLHL34Q8N239 644 aa13.23□□□□□ -0.29
ATP13A3-208ENST00000485194 MIER1Q8N108 512 aa13.22□□□□□ -0.29
ATP13A3-208ENST00000485194 IFNLR1Q8IU57 520 aaPredicted RBP13.21□□□□□ -0.29
ATP13A3-208ENST00000485194 PLEKHG5O94827 1062 aa13.19□□□□□ -0.3
ATP13A3-208ENST00000485194 SPDYE1Q8NFV5 336 aaPredicted RBP13.18□□□□□ -0.3
ATP13A3-208ENST00000485194 CLEC11AQ9Y240 323 aa13.17□□□□□ -0.3
ATP13A3-208ENST00000485194 EVX2Q03828 476 aa13.15□□□□□ -0.3
ATP13A3-208ENST00000485194 SPOCK2Q92563 424 aa13.08□□□□□ -0.32
ATP13A3-208ENST00000485194 PRR29P0C7W0 189 aa13.07□□□□□ -0.32
ATP13A3-208ENST00000485194 ZBTB47Q9UFB7 747 aaPredicted RBP13.06□□□□□ -0.32
ATP13A3-208ENST00000485194 DCAF8L2P0C7V8 631 aa12.9□□□□□ -0.34
ATP13A3-208ENST00000485194 PRKAR2AP13861 404 aaKnown RBP12.9□□□□□ -0.34
ATP13A3-208ENST00000485194 CIZ1Q9ULV3 898 aaPredicted RBP12.89□□□□□ -0.35
ATP13A3-208ENST00000485194 CREBZFQ9NS37 354 aa12.87□□□□□ -0.35
ATP13A3-208ENST00000485194 PKD2Q13563 968 aa12.86□□□□□ -0.35
ATP13A3-208ENST00000485194 ECM2O94769 699 aaPredicted RBP12.85□□□□□ -0.35
ATP13A3-208ENST00000485194 C19orf67A6NJJ6 358 aa12.83□□□□□ -0.36
ATP13A3-208ENST00000485194 GABBR2O75899 941 aa12.81□□□□□ -0.36
ATP13A3-208ENST00000485194 LHX8Q68G74 356 aa12.8□□□□□ -0.36
ATP13A3-208ENST00000485194 NPM1P06748 294 aaKnown RBP eCLIP12.78□□□□□ -0.36
ATP13A3-208ENST00000485194 GSE1Q14687 1217 aa12.76□□□□□ -0.37
ATP13A3-208ENST00000485194 DCAF8Q5TAQ9 597 aa12.76□□□□□ -0.37
ATP13A3-208ENST00000485194 CHADLQ6NUI6 762 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms