Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP1AQ9HD42 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP1AQ9HD42 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
CHMP1AQ9HD42 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP1AQ9HD42 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CHMP1AQ9HD42 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP1AQ9HD42 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.54■□□□□ 0.72
CHMP1AQ9HD42 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CHMP1AQ9HD42 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP1AQ9HD42 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CHMP1AQ9HD42 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 MIR4449-201ENST00000578365 66 ntBASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP1AQ9HD42 C9orf163-202ENST00000624034 2573 ntBASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 AC133552.2-201ENST00000619106 1032 ntBASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP1AQ9HD42 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CHMP1AQ9HD42 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 AL117328.2-201ENST00000624617 1940 ntBASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 AC009831.1-201ENST00000580420 1582 ntBASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP1AQ9HD42 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP1AQ9HD42 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms