Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.43□□□□□ -0.1
LINC00643Q86TS7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC00643Q86TS7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC00643Q86TS7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
LINC00643Q86TS7 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.11
LINC00643Q86TS7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00643Q86TS7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 BID-212ENST00000614949 1988 ntTSL 5 BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00643Q86TS7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00643Q86TS7 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LINC00643Q86TS7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms