Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
USP54Q70EL1 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
USP54Q70EL1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC31.02■■■□□ 2.56
USP54Q70EL1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC31.02■■■□□ 2.56
USP54Q70EL1 RASA4CP-201ENST00000424092 1398 ntBASIC31.01■■■□□ 2.56
USP54Q70EL1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.55
USP54Q70EL1 AC091060.1-201ENST00000623524 1766 ntBASIC31.01■■■□□ 2.55
USP54Q70EL1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC31.01■■■□□ 2.55
USP54Q70EL1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
USP54Q70EL1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC31■■■□□ 2.55
USP54Q70EL1 CA15P2-201ENST00000611168 834 ntBASIC31■■■□□ 2.55
USP54Q70EL1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC31■■■□□ 2.55
USP54Q70EL1 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC31■■■□□ 2.55
USP54Q70EL1 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
USP54Q70EL1 AC145676.1-201ENST00000514988 2004 ntBASIC31■■■□□ 2.55
USP54Q70EL1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
USP54Q70EL1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC31■■■□□ 2.55
USP54Q70EL1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USP54Q70EL1 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USP54Q70EL1 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC30.99■■■□□ 2.55
USP54Q70EL1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
USP54Q70EL1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC30.99■■■□□ 2.55
USP54Q70EL1 MAG-206ENST00000597035 542 ntTSL 4 BASIC30.99■■■□□ 2.55
USP54Q70EL1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.99■■■□□ 2.55
USP54Q70EL1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.99■■■□□ 2.55
USP54Q70EL1 AL161729.1-201ENST00000604104 1402 ntBASIC30.98■■■□□ 2.55
USP54Q70EL1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC30.98■■■□□ 2.55
USP54Q70EL1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC30.98■■■□□ 2.55
USP54Q70EL1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.98■■■□□ 2.55
USP54Q70EL1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
USP54Q70EL1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC30.97■■■□□ 2.55
USP54Q70EL1 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP54Q70EL1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
USP54Q70EL1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.97■■■□□ 2.55
USP54Q70EL1 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
USP54Q70EL1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
USP54Q70EL1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
USP54Q70EL1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
USP54Q70EL1 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
USP54Q70EL1 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
USP54Q70EL1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
USP54Q70EL1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
USP54Q70EL1 NKILA-201ENST00000613231 537 ntTSL 4 BASIC30.96■■■□□ 2.55
USP54Q70EL1 AC241377.3-202ENST00000626088 1088 ntBASIC30.96■■■□□ 2.55
USP54Q70EL1 AC241585.3-202ENST00000628937 1088 ntBASIC30.96■■■□□ 2.55
USP54Q70EL1 AC245100.8-202ENST00000629247 1058 ntBASIC30.96■■■□□ 2.55
USP54Q70EL1 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
USP54Q70EL1 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
USP54Q70EL1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.96■■■□□ 2.55
USP54Q70EL1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC30.95■■■□□ 2.55
USP54Q70EL1 AC104564.3-201ENST00000582367 638 ntBASIC30.95■■■□□ 2.55
USP54Q70EL1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
USP54Q70EL1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.95■■■□□ 2.54
USP54Q70EL1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
USP54Q70EL1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.95■■■□□ 2.54
USP54Q70EL1 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
USP54Q70EL1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
USP54Q70EL1 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
USP54Q70EL1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
USP54Q70EL1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC30.94■■■□□ 2.54
USP54Q70EL1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
USP54Q70EL1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
USP54Q70EL1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
USP54Q70EL1 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
USP54Q70EL1 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
USP54Q70EL1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
USP54Q70EL1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.93■■■□□ 2.54
USP54Q70EL1 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
USP54Q70EL1 MIR6821-201ENST00000617625 74 ntBASIC30.93■■■□□ 2.54
USP54Q70EL1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
USP54Q70EL1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
USP54Q70EL1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
USP54Q70EL1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC30.92■■■□□ 2.54
USP54Q70EL1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
USP54Q70EL1 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC30.91■■■□□ 2.54
USP54Q70EL1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
USP54Q70EL1 AC099791.1-201ENST00000416440 715 ntBASIC30.91■■■□□ 2.54
USP54Q70EL1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
USP54Q70EL1 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
USP54Q70EL1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
USP54Q70EL1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC30.91■■■□□ 2.54
USP54Q70EL1 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
USP54Q70EL1 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC30.9■■■□□ 2.54
USP54Q70EL1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC30.9■■■□□ 2.54
USP54Q70EL1 AC097381.1-201ENST00000429019 1296 ntBASIC30.9■■■□□ 2.54
USP54Q70EL1 MIR5787-201ENST00000611784 55 ntBASIC30.9■■■□□ 2.54
USP54Q70EL1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
USP54Q70EL1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
USP54Q70EL1 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
USP54Q70EL1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.9■■■□□ 2.54
USP54Q70EL1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
USP54Q70EL1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.9■■■□□ 2.54
USP54Q70EL1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
USP54Q70EL1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP54Q70EL1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
USP54Q70EL1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
USP54Q70EL1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
USP54Q70EL1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
USP54Q70EL1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP54Q70EL1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms