Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MIR3181-201ENST00000578512 73 ntBASIC29.29■■■□□ 2.28
RC3H1Q5TC82 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.29■■■□□ 2.28
RC3H1Q5TC82 AL022069.1-201ENST00000568025 1636 ntBASIC29.29■■■□□ 2.28
RC3H1Q5TC82 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC29.29■■■□□ 2.28
RC3H1Q5TC82 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
RC3H1Q5TC82 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.28■■■□□ 2.28
RC3H1Q5TC82 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
RC3H1Q5TC82 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.27■■■□□ 2.28
RC3H1Q5TC82 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC29.27■■■□□ 2.28
RC3H1Q5TC82 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC29.27■■■□□ 2.28
RC3H1Q5TC82 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
RC3H1Q5TC82 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
RC3H1Q5TC82 SNX3-202ENST00000349379 890 ntTSL 2 BASIC29.26■■■□□ 2.27
RC3H1Q5TC82 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
RC3H1Q5TC82 AC034268.1-201ENST00000441047 882 ntBASIC29.26■■■□□ 2.27
RC3H1Q5TC82 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC29.26■■■□□ 2.27
RC3H1Q5TC82 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC29.26■■■□□ 2.27
RC3H1Q5TC82 MIR6089-201ENST00000616698 64 ntBASIC29.26■■■□□ 2.27
RC3H1Q5TC82 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
RC3H1Q5TC82 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC29.26■■■□□ 2.27
RC3H1Q5TC82 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
RC3H1Q5TC82 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
RC3H1Q5TC82 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
RC3H1Q5TC82 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC29.25■■■□□ 2.27
RC3H1Q5TC82 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
RC3H1Q5TC82 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
RC3H1Q5TC82 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
RC3H1Q5TC82 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
RC3H1Q5TC82 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.24■■■□□ 2.27
RC3H1Q5TC82 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC29.24■■■□□ 2.27
RC3H1Q5TC82 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
RC3H1Q5TC82 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
RC3H1Q5TC82 RARRES2P11-201ENST00000635158 484 ntBASIC29.24■■■□□ 2.27
RC3H1Q5TC82 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC29.24■■■□□ 2.27
RC3H1Q5TC82 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC29.23■■■□□ 2.27
RC3H1Q5TC82 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
RC3H1Q5TC82 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC29.23■■■□□ 2.27
RC3H1Q5TC82 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
RC3H1Q5TC82 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.23■■■□□ 2.27
RC3H1Q5TC82 SLC6A10P-202ENST00000431994 2058 ntBASIC29.23■■■□□ 2.27
RC3H1Q5TC82 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.23■■■□□ 2.27
RC3H1Q5TC82 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC29.23■■■□□ 2.27
RC3H1Q5TC82 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 GRAMD4P2-201ENST00000423297 1097 ntBASIC29.22■■■□□ 2.27
RC3H1Q5TC82 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 AC009086.3-201ENST00000623486 1008 ntBASIC29.22■■■□□ 2.27
RC3H1Q5TC82 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RC3H1Q5TC82 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 VGF-203ENST00000611537 1622 ntTSL 5 BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC29.21■■■□□ 2.27
RC3H1Q5TC82 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC29.2■■■□□ 2.27
RC3H1Q5TC82 ASB1-202ENST00000409297 878 ntTSL 5 BASIC29.2■■■□□ 2.26
RC3H1Q5TC82 AC090192.1-201ENST00000517740 490 ntBASIC29.2■■■□□ 2.26
RC3H1Q5TC82 AC022517.1-201ENST00000592429 346 ntBASIC29.2■■■□□ 2.26
RC3H1Q5TC82 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC29.2■■■□□ 2.26
RC3H1Q5TC82 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.26
RC3H1Q5TC82 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
RC3H1Q5TC82 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RC3H1Q5TC82 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
RC3H1Q5TC82 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC29.19■■■□□ 2.26
RC3H1Q5TC82 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RC3H1Q5TC82 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.19■■■□□ 2.26
RC3H1Q5TC82 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
RC3H1Q5TC82 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
RC3H1Q5TC82 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.18■■■□□ 2.26
RC3H1Q5TC82 AC092803.2-201ENST00000564287 1899 ntBASIC29.18■■■□□ 2.26
RC3H1Q5TC82 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
RC3H1Q5TC82 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
RC3H1Q5TC82 HACD1-201ENST00000326961 773 ntTSL 2 BASIC29.17■■■□□ 2.26
RC3H1Q5TC82 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
RC3H1Q5TC82 YBX1P1-201ENST00000445822 960 ntBASIC29.17■■■□□ 2.26
RC3H1Q5TC82 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
RC3H1Q5TC82 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.17■■■□□ 2.26
RC3H1Q5TC82 IKBKGP1-201ENST00000612193 1073 ntBASIC29.17■■■□□ 2.26
RC3H1Q5TC82 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC29.16■■■□□ 2.26
RC3H1Q5TC82 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
RC3H1Q5TC82 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms