Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
COL3A1P02461 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
COL3A1P02461 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL3A1P02461 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL3A1P02461 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL3A1P02461 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL3A1P02461 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL3A1P02461 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL3A1P02461 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL3A1P02461 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC30.64■■■□□ 2.5
COL3A1P02461 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL3A1P02461 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
COL3A1P02461 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
COL3A1P02461 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
COL3A1P02461 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC30.64■■■□□ 2.5
COL3A1P02461 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC30.64■■■□□ 2.5
COL3A1P02461 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
COL3A1P02461 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
COL3A1P02461 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC30.64■■■□□ 2.49
COL3A1P02461 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.49
COL3A1P02461 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.49
COL3A1P02461 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.49
COL3A1P02461 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL3A1P02461 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.63■■■□□ 2.49
COL3A1P02461 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC30.63■■■□□ 2.49
COL3A1P02461 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL3A1P02461 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL3A1P02461 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC30.63■■■□□ 2.49
COL3A1P02461 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
COL3A1P02461 AL139125.2-201ENST00000623134 1869 ntBASIC30.62■■■□□ 2.49
COL3A1P02461 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL3A1P02461 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC30.62■■■□□ 2.49
COL3A1P02461 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
COL3A1P02461 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL3A1P02461 AL356740.2-201ENST00000601559 647 ntBASIC30.61■■■□□ 2.49
COL3A1P02461 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.61■■■□□ 2.49
COL3A1P02461 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL3A1P02461 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
COL3A1P02461 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
COL3A1P02461 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL3A1P02461 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL3A1P02461 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.59■■■□□ 2.49
COL3A1P02461 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
COL3A1P02461 AC005703.6-201ENST00000623265 1329 ntBASIC30.59■■■□□ 2.49
COL3A1P02461 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.59■■■□□ 2.49
COL3A1P02461 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.59■■■□□ 2.49
COL3A1P02461 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL3A1P02461 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL3A1P02461 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL3A1P02461 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC30.59■■■□□ 2.49
COL3A1P02461 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL3A1P02461 REST-206ENST00000612429 1376 ntTSL 5 BASIC30.59■■■□□ 2.49
COL3A1P02461 REST-207ENST00000616975 1370 ntTSL 5 BASIC30.59■■■□□ 2.49
COL3A1P02461 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL3A1P02461 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL3A1P02461 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL3A1P02461 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
COL3A1P02461 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC30.58■■■□□ 2.49
COL3A1P02461 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL3A1P02461 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
COL3A1P02461 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL3A1P02461 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL3A1P02461 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
COL3A1P02461 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
COL3A1P02461 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
COL3A1P02461 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.57■■■□□ 2.48
COL3A1P02461 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL3A1P02461 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL3A1P02461 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL3A1P02461 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL3A1P02461 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.56■■■□□ 2.48
COL3A1P02461 AL136116.3-201ENST00000402907 1138 ntBASIC30.56■■■□□ 2.48
COL3A1P02461 PREB-202ENST00000406567 1910 ntTSL 5 BASIC30.56■■■□□ 2.48
COL3A1P02461 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.56■■■□□ 2.48
COL3A1P02461 ALDH1A3-203ENST00000557963 1670 ntBASIC30.55■■■□□ 2.48
COL3A1P02461 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
COL3A1P02461 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.55■■■□□ 2.48
COL3A1P02461 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL3A1P02461 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL3A1P02461 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL3A1P02461 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL3A1P02461 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
COL3A1P02461 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
COL3A1P02461 AC008406.3-201ENST00000620001 1374 ntBASIC30.53■■■□□ 2.48
COL3A1P02461 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL3A1P02461 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL3A1P02461 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC30.52■■■□□ 2.48
COL3A1P02461 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL3A1P02461 LINC00543-201ENST00000567234 1845 ntBASIC30.52■■■□□ 2.48
COL3A1P02461 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC30.52■■■□□ 2.48
COL3A1P02461 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.52■■■□□ 2.48
COL3A1P02461 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.52■■■□□ 2.48
COL3A1P02461 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL3A1P02461 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
COL3A1P02461 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.51■■■□□ 2.48
COL3A1P02461 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC30.51■■■□□ 2.48
COL3A1P02461 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.51■■■□□ 2.48
COL3A1P02461 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.51■■■□□ 2.48
COL3A1P02461 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
COL3A1P02461 AC141586.4-201ENST00000624558 1573 ntBASIC30.51■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms