Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.41■■□□□ 1.34
CBX4O00257 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CBX4O00257 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
CBX4O00257 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.41■■□□□ 1.34
CBX4O00257 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
CBX4O00257 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.41■■□□□ 1.34
CBX4O00257 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CBX4O00257 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
CBX4O00257 AL161729.1-201ENST00000604104 1402 ntBASIC23.41■■□□□ 1.34
CBX4O00257 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CBX4O00257 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
CBX4O00257 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CBX4O00257 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CBX4O00257 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.4■■□□□ 1.34
CBX4O00257 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CBX4O00257 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CBX4O00257 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
CBX4O00257 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
CBX4O00257 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.39■■□□□ 1.33
CBX4O00257 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CBX4O00257 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CBX4O00257 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CBX4O00257 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.39■■□□□ 1.33
CBX4O00257 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.39■■□□□ 1.33
CBX4O00257 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.39■■□□□ 1.33
CBX4O00257 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CBX4O00257 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CBX4O00257 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CBX4O00257 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.38■■□□□ 1.33
CBX4O00257 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CBX4O00257 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.38■■□□□ 1.33
CBX4O00257 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CBX4O00257 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.38■■□□□ 1.33
CBX4O00257 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.38■■□□□ 1.33
CBX4O00257 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CBX4O00257 AL117332.1-201ENST00000622628 974 ntBASIC23.38■■□□□ 1.33
CBX4O00257 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.38■■□□□ 1.33
CBX4O00257 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CBX4O00257 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CBX4O00257 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.37■■□□□ 1.33
CBX4O00257 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.37■■□□□ 1.33
CBX4O00257 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
CBX4O00257 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CBX4O00257 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CBX4O00257 AC005703.6-201ENST00000623265 1329 ntBASIC23.36■■□□□ 1.33
CBX4O00257 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.36■■□□□ 1.33
CBX4O00257 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.36■■□□□ 1.33
CBX4O00257 AL356740.2-201ENST00000601559 647 ntBASIC23.36■■□□□ 1.33
CBX4O00257 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC23.36■■□□□ 1.33
CBX4O00257 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CBX4O00257 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
CBX4O00257 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
CBX4O00257 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CBX4O00257 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CBX4O00257 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CBX4O00257 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CBX4O00257 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.35■■□□□ 1.33
CBX4O00257 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CBX4O00257 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.35■■□□□ 1.33
CBX4O00257 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.35■■□□□ 1.33
CBX4O00257 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CBX4O00257 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CBX4O00257 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CBX4O00257 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.34■■□□□ 1.33
CBX4O00257 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CBX4O00257 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CBX4O00257 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.34■■□□□ 1.33
CBX4O00257 MIR3621-201ENST00000580529 85 ntBASIC23.34■■□□□ 1.33
CBX4O00257 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.34■■□□□ 1.33
CBX4O00257 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CBX4O00257 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CBX4O00257 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CBX4O00257 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.34■■□□□ 1.33
CBX4O00257 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.34■■□□□ 1.33
CBX4O00257 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
CBX4O00257 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CBX4O00257 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CBX4O00257 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.33■■□□□ 1.33
CBX4O00257 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.33■■□□□ 1.33
CBX4O00257 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.33■■□□□ 1.33
CBX4O00257 LINC00543-201ENST00000567234 1845 ntBASIC23.33■■□□□ 1.32
CBX4O00257 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CBX4O00257 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.33■■□□□ 1.32
CBX4O00257 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CBX4O00257 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CBX4O00257 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
CBX4O00257 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.32■■□□□ 1.32
CBX4O00257 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CBX4O00257 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CBX4O00257 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CBX4O00257 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CBX4O00257 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
CBX4O00257 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CBX4O00257 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CBX4O00257 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CBX4O00257 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.31■■□□□ 1.32
CBX4O00257 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.31■■□□□ 1.32
CBX4O00257 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CBX4O00257 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CBX4O00257 ALDH1A3-203ENST00000557963 1670 ntBASIC23.31■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms