Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 TPRX2P-201ENST00000535362 881 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 AC036164.1-201ENST00000570544 333 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 AL391069.4-201ENST00000609583 481 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 CLK3P2-201ENST00000427566 1453 ntBASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC39Q9UFE4 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 INGX-202ENST00000489074 768 ntBASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC39Q9UFE4 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 MEP1AP4-201ENST00000423244 1087 ntBASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC39Q9UFE4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms