Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AC015656.1-201ENST00000624209 3578 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TMEM14DP-201ENST00000422205 345 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AC008735.3-201ENST00000596646 500 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AC007967.4-201ENST00000614700 386 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AL645728.2-202ENST00000641679 227 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TUBB1P2-201ENST00000422712 1306 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TUBB1P1-201ENST00000503144 1300 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 AP3S2-216ENST00000617003 1561 ntBASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
PDLIM3Q53GG5 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 AC005912.2-201ENST00000619492 2400 ntBASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 AC007389.4-201ENST00000454674 793 ntBASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PDLIM3Q53GG5 RARRES2P9-201ENST00000565168 469 ntBASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms