Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LIMK1P53667 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 CICP23-201ENST00000605013 2741 ntBASIC14.7□□□□□ -0.06
LIMK1P53667 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
LIMK1P53667 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIMK1P53667 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.69□□□□□ -0.06
LIMK1P53667 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIMK1P53667 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 GRK6P1-201ENST00000400595 1711 ntBASIC14.69□□□□□ -0.06
LIMK1P53667 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.69□□□□□ -0.06
LIMK1P53667 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
LIMK1P53667 AC018892.3-201ENST00000623986 2499 ntBASIC14.69□□□□□ -0.06
LIMK1P53667 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.69□□□□□ -0.06
LIMK1P53667 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LIMK1P53667 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.69□□□□□ -0.06
LIMK1P53667 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.69□□□□□ -0.06
LIMK1P53667 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.69□□□□□ -0.06
LIMK1P53667 MIR6858-201ENST00000620733 67 ntBASIC14.69□□□□□ -0.06
LIMK1P53667 AL645728.2-202ENST00000641679 227 ntBASIC14.69□□□□□ -0.06
LIMK1P53667 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LIMK1P53667 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
LIMK1P53667 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.69□□□□□ -0.06
LIMK1P53667 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIMK1P53667 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.68□□□□□ -0.06
LIMK1P53667 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 AC010141.1-201ENST00000411585 623 ntBASIC14.68□□□□□ -0.06
LIMK1P53667 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
LIMK1P53667 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 VDAC1P1-201ENST00000439229 848 ntBASIC14.68□□□□□ -0.06
LIMK1P53667 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.68□□□□□ -0.06
LIMK1P53667 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.68□□□□□ -0.06
LIMK1P53667 AC018463.1-201ENST00000456674 917 ntBASIC14.68□□□□□ -0.06
LIMK1P53667 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.68□□□□□ -0.06
LIMK1P53667 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.68□□□□□ -0.06
LIMK1P53667 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 RN7SL596P-201ENST00000582123 288 ntBASIC14.68□□□□□ -0.06
LIMK1P53667 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 AC007881.3-201ENST00000608897 607 ntBASIC14.68□□□□□ -0.06
LIMK1P53667 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 AC138466.4-201ENST00000623965 852 ntBASIC14.68□□□□□ -0.06
LIMK1P53667 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC14.68□□□□□ -0.06
LIMK1P53667 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms