Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CX3CR1P49238 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 AP001267.2-201ENST00000532619 2086 ntBASIC13.18□□□□□ -0.3
CX3CR1P49238 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 RNU1-114P-201ENST00000365297 166 ntBASIC13.18□□□□□ -0.3
CX3CR1P49238 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CX3CR1P49238 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.18□□□□□ -0.3
CX3CR1P49238 DFFBP1-201ENST00000433250 979 ntBASIC13.18□□□□□ -0.3
CX3CR1P49238 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.18□□□□□ -0.3
CX3CR1P49238 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 AC123567.1-201ENST00000548294 1261 ntBASIC13.18□□□□□ -0.3
CX3CR1P49238 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
CX3CR1P49238 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 AC008761.3-201ENST00000624803 892 ntBASIC13.18□□□□□ -0.3
CX3CR1P49238 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 PRSS30P-206ENST00000641773 873 ntBASIC13.18□□□□□ -0.3
CX3CR1P49238 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 KRT8P22-201ENST00000562317 1415 ntBASIC13.18□□□□□ -0.3
CX3CR1P49238 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.18□□□□□ -0.3
CX3CR1P49238 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.18□□□□□ -0.3
CX3CR1P49238 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CX3CR1P49238 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
CX3CR1P49238 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
CX3CR1P49238 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
CX3CR1P49238 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.17□□□□□ -0.3
CX3CR1P49238 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.17□□□□□ -0.3
CX3CR1P49238 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CX3CR1P49238 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CX3CR1P49238 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
CX3CR1P49238 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.17□□□□□ -0.3
CX3CR1P49238 SPTLC1P1-201ENST00000447199 261 ntBASIC13.17□□□□□ -0.3
CX3CR1P49238 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
CX3CR1P49238 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 SERBP1P5-201ENST00000510079 1181 ntBASIC13.17□□□□□ -0.3
CX3CR1P49238 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.17□□□□□ -0.3
CX3CR1P49238 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CX3CR1P49238 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.17□□□□□ -0.3
CX3CR1P49238 AL359711.2-201ENST00000563105 872 ntBASIC13.17□□□□□ -0.3
CX3CR1P49238 AC124283.3-201ENST00000570869 594 ntBASIC13.17□□□□□ -0.3
CX3CR1P49238 AL132655.2-201ENST00000596276 594 ntBASIC13.17□□□□□ -0.3
CX3CR1P49238 AC004233.3-201ENST00000607794 1269 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms