Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
ERCC3P19447 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC3P19447 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.29■□□□□ 0.36
ERCC3P19447 AL133466.1-201ENST00000447582 150 ntBASIC17.29■□□□□ 0.36
ERCC3P19447 RN7SL11P-201ENST00000471305 293 ntBASIC17.29■□□□□ 0.36
ERCC3P19447 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC3P19447 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.29■□□□□ 0.36
ERCC3P19447 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.29■□□□□ 0.36
ERCC3P19447 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.29■□□□□ 0.36
ERCC3P19447 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 BNIP3P13-201ENST00000599968 566 ntBASIC17.29■□□□□ 0.36
ERCC3P19447 AC091544.8-201ENST00000619490 361 ntBASIC17.29■□□□□ 0.36
ERCC3P19447 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.29■□□□□ 0.36
ERCC3P19447 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 AC007686.3-201ENST00000619017 3487 ntBASIC17.29■□□□□ 0.36
ERCC3P19447 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ERCC3P19447 TMBIM7P-203ENST00000641617 1718 ntBASIC17.29■□□□□ 0.36
ERCC3P19447 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ERCC3P19447 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ERCC3P19447 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC3P19447 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ERCC3P19447 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.29■□□□□ 0.36
ERCC3P19447 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
ERCC3P19447 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ERCC3P19447 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 AC006486.2-201ENST00000624246 2199 ntBASIC17.28■□□□□ 0.36
ERCC3P19447 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.28■□□□□ 0.36
ERCC3P19447 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 AL008707.1-201ENST00000422498 534 ntBASIC17.28■□□□□ 0.36
ERCC3P19447 GHSR-202ENST00000427970 912 ntBASIC17.28■□□□□ 0.36
ERCC3P19447 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.28■□□□□ 0.36
ERCC3P19447 RN7SL720P-201ENST00000488178 304 ntBASIC17.28■□□□□ 0.36
ERCC3P19447 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC17.28■□□□□ 0.36
ERCC3P19447 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.28■□□□□ 0.36
ERCC3P19447 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.28■□□□□ 0.36
ERCC3P19447 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.28■□□□□ 0.36
ERCC3P19447 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.28■□□□□ 0.36
ERCC3P19447 AL358472.3-201ENST00000608147 415 ntBASIC17.28■□□□□ 0.36
ERCC3P19447 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.28■□□□□ 0.36
ERCC3P19447 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ERCC3P19447 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ERCC3P19447 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
ERCC3P19447 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC3P19447 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
ERCC3P19447 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC3P19447 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.27■□□□□ 0.36
ERCC3P19447 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC3P19447 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
ERCC3P19447 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 AC023157.3-201ENST00000619086 2088 ntBASIC17.27■□□□□ 0.36
ERCC3P19447 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC3P19447 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.27■□□□□ 0.36
ERCC3P19447 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.27■□□□□ 0.36
ERCC3P19447 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.27■□□□□ 0.36
ERCC3P19447 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ERCC3P19447 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.27■□□□□ 0.36
ERCC3P19447 Z97180.1-201ENST00000445173 988 ntBASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms