Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
CCDC188H7C350 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC188H7C350 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC188H7C350 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 TLE1P1-201ENST00000422965 589 ntBASIC15.54■□□□□ 0.08
CCDC188H7C350 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 AC114501.2-201ENST00000439631 535 ntBASIC15.54■□□□□ 0.08
CCDC188H7C350 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC188H7C350 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.54■□□□□ 0.08
CCDC188H7C350 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC188H7C350 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CCDC188H7C350 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
CCDC188H7C350 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC188H7C350 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC188H7C350 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
CCDC188H7C350 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.54■□□□□ 0.08
CCDC188H7C350 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.54■□□□□ 0.08
CCDC188H7C350 PPT1-213ENST00000641319 2388 ntBASIC15.54■□□□□ 0.08
CCDC188H7C350 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CCDC188H7C350 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 PTENP1-202ENST00000532280 3996 ntBASIC15.53■□□□□ 0.08
CCDC188H7C350 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 AC007326.2-201ENST00000624224 7579 ntBASIC15.53■□□□□ 0.08
CCDC188H7C350 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC188H7C350 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.53■□□□□ 0.08
CCDC188H7C350 AC004945.1-201ENST00000416738 983 ntBASIC15.53■□□□□ 0.08
CCDC188H7C350 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.53■□□□□ 0.08
CCDC188H7C350 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.53■□□□□ 0.08
CCDC188H7C350 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.53■□□□□ 0.08
CCDC188H7C350 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 AL844908.2-201ENST00000609461 460 ntBASIC15.53■□□□□ 0.08
CCDC188H7C350 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CCDC188H7C350 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
CCDC188H7C350 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC15.53■□□□□ 0.08
CCDC188H7C350 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC15.53■□□□□ 0.08
CCDC188H7C350 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CCDC188H7C350 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.52■□□□□ 0.08
CCDC188H7C350 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.52■□□□□ 0.08
CCDC188H7C350 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.52■□□□□ 0.08
CCDC188H7C350 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC188H7C350 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC188H7C350 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC188H7C350 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC188H7C350 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC188H7C350 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CCDC188H7C350 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.52■□□□□ 0.08
CCDC188H7C350 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms