Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 RN7SKP175-201ENST00000408472 289 ntBASIC16.07■□□□□ 0.16
LRCH3Q96II8 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 AL135901.1-201ENST00000451812 333 ntBASIC16.07■□□□□ 0.16
LRCH3Q96II8 FTH1P22-201ENST00000456305 520 ntBASIC16.07■□□□□ 0.16
LRCH3Q96II8 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 RN7SL121P-201ENST00000584223 273 ntBASIC16.07■□□□□ 0.16
LRCH3Q96II8 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 CMC2-224ENST00000630396 481 ntTSL 5 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.07■□□□□ 0.16
LRCH3Q96II8 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LRCH3Q96II8 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.06■□□□□ 0.16
LRCH3Q96II8 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 AC009560.1-201ENST00000620208 434 ntBASIC16.06■□□□□ 0.16
LRCH3Q96II8 AC007386.2-202ENST00000622718 1018 ntTSL 3 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 AL603832.2-201ENST00000566195 2125 ntBASIC16.06■□□□□ 0.16
LRCH3Q96II8 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LRCH3Q96II8 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LRCH3Q96II8 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 RAN-210ENST00000541630 1475 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms