Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC19.2■□□□□ 0.66
USP54Q70EL1 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 LINC00115-201ENST00000473798 1317 ntBASIC19.2■□□□□ 0.66
USP54Q70EL1 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC19.2■□□□□ 0.66
USP54Q70EL1 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC19.2■□□□□ 0.66
USP54Q70EL1 RN7SL767P-201ENST00000493013 295 ntBASIC19.2■□□□□ 0.66
USP54Q70EL1 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC19.2■□□□□ 0.66
USP54Q70EL1 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC19.2■□□□□ 0.66
USP54Q70EL1 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC19.2■□□□□ 0.66
USP54Q70EL1 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC19.2■□□□□ 0.66
USP54Q70EL1 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC19.2■□□□□ 0.66
USP54Q70EL1 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP54Q70EL1 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC19.19■□□□□ 0.66
USP54Q70EL1 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.19■□□□□ 0.66
USP54Q70EL1 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC19.19■□□□□ 0.66
USP54Q70EL1 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC19.19■□□□□ 0.66
USP54Q70EL1 REEP5-205ENST00000504247 480 ntTSL 5 BASIC19.19■□□□□ 0.66
USP54Q70EL1 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC19.19■□□□□ 0.66
USP54Q70EL1 SNORD3B-1-201ENST00000577988 758 ntBASIC19.19■□□□□ 0.66
USP54Q70EL1 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC19.19■□□□□ 0.66
USP54Q70EL1 AC073592.2-201ENST00000623062 780 ntBASIC19.19■□□□□ 0.66
USP54Q70EL1 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.19■□□□□ 0.66
USP54Q70EL1 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.19■□□□□ 0.66
USP54Q70EL1 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP54Q70EL1 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
USP54Q70EL1 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 Z69890.1-201ENST00000382990 339 ntBASIC19.18■□□□□ 0.66
USP54Q70EL1 AC103592.1-201ENST00000394513 664 ntBASIC19.18■□□□□ 0.66
USP54Q70EL1 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC19.18■□□□□ 0.66
USP54Q70EL1 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 AC234644.1-201ENST00000406065 370 ntBASIC19.18■□□□□ 0.66
USP54Q70EL1 GCSHP3-201ENST00000431120 391 ntBASIC19.18■□□□□ 0.66
USP54Q70EL1 AC093909.3-201ENST00000504783 336 ntBASIC19.18■□□□□ 0.66
USP54Q70EL1 USB1-205ENST00000561743 1135 ntTSL 3 BASIC19.18■□□□□ 0.66
USP54Q70EL1 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC19.18■□□□□ 0.66
USP54Q70EL1 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC19.18■□□□□ 0.66
USP54Q70EL1 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 AC073347.1-201ENST00000421633 2643 ntBASIC19.18■□□□□ 0.66
USP54Q70EL1 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 USP39-220ENST00000613444 2161 ntTSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 SARS-202ENST00000369923 1882 ntTSL 5 BASIC19.18■□□□□ 0.66
USP54Q70EL1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 ODCP-201ENST00000459650 1639 ntBASIC19.18■□□□□ 0.66
USP54Q70EL1 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
USP54Q70EL1 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC19.18■□□□□ 0.66
USP54Q70EL1 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP54Q70EL1 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.18■□□□□ 0.66
USP54Q70EL1 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC19.18■□□□□ 0.66
USP54Q70EL1 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC19.18■□□□□ 0.66
USP54Q70EL1 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 ACTG1P19-201ENST00000418987 1116 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC19.17■□□□□ 0.66
USP54Q70EL1 CHCHD2P2-201ENST00000503744 321 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 C2orf69P1-201ENST00000563532 1093 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms