Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 AL137783.1-201ENST00000623494 1896 ntBASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SMARCD3Q6STE5 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AL645937.2-201ENST00000396808 931 ntBASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AC241585.1-201ENST00000433527 519 ntBASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AC009477.1-201ENST00000452936 217 ntBASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 AL391069.4-201ENST00000609583 481 ntBASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 CLK3P2-201ENST00000427566 1453 ntBASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SMARCD3Q6STE5 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 AL158070.2-201ENST00000623713 1621 ntBASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 AC055811.4-201ENST00000624039 1754 ntBASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
SMARCD3Q6STE5 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.7□□□□□ -0.22
SMARCD3Q6STE5 MIR943-201ENST00000401286 94 ntBASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms