Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HOXC9P31274 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HOXC9P31274 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
HOXC9P31274 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC9P31274 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC19.48■□□□□ 0.71
HOXC9P31274 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.48■□□□□ 0.71
HOXC9P31274 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC9P31274 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXC9P31274 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXC9P31274 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC9P31274 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HOXC9P31274 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 AL627422.1-201ENST00000434104 580 ntBASIC19.47■□□□□ 0.71
HOXC9P31274 RPL7P35-201ENST00000446943 740 ntBASIC19.47■□□□□ 0.71
HOXC9P31274 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC9P31274 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC19.47■□□□□ 0.71
HOXC9P31274 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXC9P31274 AC084781.1-201ENST00000613737 656 ntBASIC19.47■□□□□ 0.71
HOXC9P31274 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.47■□□□□ 0.71
HOXC9P31274 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXC9P31274 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
HOXC9P31274 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
HOXC9P31274 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 AC132872.4-202ENST00000622924 2756 ntBASIC19.47■□□□□ 0.71
HOXC9P31274 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
HOXC9P31274 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC19.47■□□□□ 0.71
HOXC9P31274 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXC9P31274 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
HOXC9P31274 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 AP002353.1-201ENST00000528257 1599 ntBASIC19.46■□□□□ 0.71
HOXC9P31274 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 JTB-202ENST00000356648 1040 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXC9P31274 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC19.46■□□□□ 0.71
HOXC9P31274 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC9P31274 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 MRPL22P1-201ENST00000505398 616 ntBASIC19.46■□□□□ 0.71
HOXC9P31274 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC19.46■□□□□ 0.71
HOXC9P31274 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC19.46■□□□□ 0.71
HOXC9P31274 MIR4649-201ENST00000582839 64 ntBASIC19.46■□□□□ 0.71
HOXC9P31274 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC9P31274 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.46■□□□□ 0.71
HOXC9P31274 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC9P31274 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
HOXC9P31274 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXC9P31274 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXC9P31274 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC9P31274 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC9P31274 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC9P31274 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXC9P31274 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HOXC9P31274 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXC9P31274 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HOXC9P31274 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HOXC9P31274 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HOXC9P31274 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXC9P31274 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC19.45■□□□□ 0.7
HOXC9P31274 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
HOXC9P31274 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms