Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.97□□□□□ -0.17
COL5A1P20908 AC244250.3-201ENST00000620749 366 ntBASIC13.97□□□□□ -0.17
COL5A1P20908 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.97□□□□□ -0.17
COL5A1P20908 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL5A1P20908 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.97□□□□□ -0.17
COL5A1P20908 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
COL5A1P20908 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.97□□□□□ -0.17
COL5A1P20908 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC13.97□□□□□ -0.17
COL5A1P20908 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.97□□□□□ -0.17
COL5A1P20908 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 BAK1P1-201ENST00000317045 636 ntBASIC13.97□□□□□ -0.17
COL5A1P20908 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL5A1P20908 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
COL5A1P20908 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 STK16-203ENST00000409516 895 ntTSL 2 BASIC13.97□□□□□ -0.17
COL5A1P20908 GCSHP3-201ENST00000431120 391 ntBASIC13.97□□□□□ -0.17
COL5A1P20908 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.97□□□□□ -0.17
COL5A1P20908 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.97□□□□□ -0.17
COL5A1P20908 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC13.97□□□□□ -0.17
COL5A1P20908 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC13.97□□□□□ -0.17
COL5A1P20908 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC13.97□□□□□ -0.17
COL5A1P20908 SIGLEC22P-201ENST00000599104 714 ntBASIC13.97□□□□□ -0.17
COL5A1P20908 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.97□□□□□ -0.17
COL5A1P20908 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC13.97□□□□□ -0.17
COL5A1P20908 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 AL591471.1-201ENST00000621855 229 ntBASIC13.97□□□□□ -0.17
COL5A1P20908 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 TEKT4P2-202ENST00000559466 1312 ntBASIC13.96□□□□□ -0.17
COL5A1P20908 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 AL136172.1-201ENST00000598590 1394 ntBASIC13.96□□□□□ -0.17
COL5A1P20908 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL5A1P20908 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC13.96□□□□□ -0.17
COL5A1P20908 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.96□□□□□ -0.17
COL5A1P20908 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
COL5A1P20908 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL5A1P20908 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL5A1P20908 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL5A1P20908 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL5A1P20908 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.96□□□□□ -0.18
COL5A1P20908 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL5A1P20908 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL5A1P20908 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.95□□□□□ -0.18
COL5A1P20908 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
COL5A1P20908 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 OR8T1P-201ENST00000421347 918 ntBASIC13.95□□□□□ -0.18
COL5A1P20908 PPP1R2P4-201ENST00000424051 595 ntBASIC13.95□□□□□ -0.18
COL5A1P20908 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC13.95□□□□□ -0.18
COL5A1P20908 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL5A1P20908 HERC2P11-201ENST00000562845 725 ntBASIC13.95□□□□□ -0.18
COL5A1P20908 AC100756.2-201ENST00000569537 736 ntBASIC13.95□□□□□ -0.18
COL5A1P20908 AC011247.3-201ENST00000603297 438 ntBASIC13.95□□□□□ -0.18
COL5A1P20908 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms