Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 MIR661-201ENST00000384842 89 ntBASIC14.24□□□□□ -0.13
SDC1P18827 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.24□□□□□ -0.13
SDC1P18827 TSPY16P-201ENST00000449843 468 ntBASIC14.24□□□□□ -0.13
SDC1P18827 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 API5-211ENST00000534695 560 ntTSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 ENPP7P5-201ENST00000541031 1031 ntBASIC14.24□□□□□ -0.13
SDC1P18827 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
SDC1P18827 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.24□□□□□ -0.13
SDC1P18827 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SDC1P18827 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
SDC1P18827 AC012617.1-204ENST00000586340 2305 ntBASIC14.24□□□□□ -0.13
SDC1P18827 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SDC1P18827 CICP4-201ENST00000447359 2812 ntBASIC14.23□□□□□ -0.13
SDC1P18827 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.23□□□□□ -0.13
SDC1P18827 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.23□□□□□ -0.13
SDC1P18827 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.23□□□□□ -0.13
SDC1P18827 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.23□□□□□ -0.13
SDC1P18827 AL136172.1-201ENST00000598590 1394 ntBASIC14.23□□□□□ -0.13
SDC1P18827 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.23□□□□□ -0.13
SDC1P18827 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.23□□□□□ -0.13
SDC1P18827 KRT8P35-201ENST00000483942 1338 ntBASIC14.23□□□□□ -0.13
SDC1P18827 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SDC1P18827 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 ACKR1-201ENST00000368121 1240 ntBASIC14.23□□□□□ -0.13
SDC1P18827 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 MIR770-201ENST00000390219 98 ntBASIC14.23□□□□□ -0.13
SDC1P18827 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.23□□□□□ -0.13
SDC1P18827 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.23□□□□□ -0.13
SDC1P18827 KRT18P25-201ENST00000508931 1278 ntBASIC14.23□□□□□ -0.13
SDC1P18827 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 AP001063.1-201ENST00000568332 529 ntBASIC14.23□□□□□ -0.13
SDC1P18827 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SDC1P18827 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.23□□□□□ -0.13
SDC1P18827 CTBP2P3-201ENST00000585629 1255 ntBASIC14.23□□□□□ -0.13
SDC1P18827 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.23□□□□□ -0.13
SDC1P18827 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SDC1P18827 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.23□□□□□ -0.13
SDC1P18827 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
SDC1P18827 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
SDC1P18827 MYADML-201ENST00000474610 2147 ntBASIC14.23□□□□□ -0.13
SDC1P18827 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SDC1P18827 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms