Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
SDCBPO00560 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.8□□□□□ -0.36
SDCBPO00560 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.8□□□□□ -0.36
SDCBPO00560 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.8□□□□□ -0.36
SDCBPO00560 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
SDCBPO00560 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.8□□□□□ -0.36
SDCBPO00560 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.8□□□□□ -0.36
SDCBPO00560 AL844908.2-201ENST00000609461 460 ntBASIC12.8□□□□□ -0.36
SDCBPO00560 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.8□□□□□ -0.36
SDCBPO00560 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.8□□□□□ -0.36
SDCBPO00560 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 AC089987.1-201ENST00000551654 2209 ntBASIC12.8□□□□□ -0.36
SDCBPO00560 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.8□□□□□ -0.36
SDCBPO00560 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 MST1P2-201ENST00000457982 2291 ntBASIC12.79□□□□□ -0.36
SDCBPO00560 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
SDCBPO00560 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.79□□□□□ -0.36
SDCBPO00560 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SDCBPO00560 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
SDCBPO00560 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.79□□□□□ -0.36
SDCBPO00560 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 AC104457.1-201ENST00000401024 814 ntBASIC12.79□□□□□ -0.36
SDCBPO00560 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 TOMM22P5-201ENST00000416399 439 ntBASIC12.79□□□□□ -0.36
SDCBPO00560 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC12.79□□□□□ -0.36
SDCBPO00560 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.79□□□□□ -0.36
SDCBPO00560 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.79□□□□□ -0.36
SDCBPO00560 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.79□□□□□ -0.36
SDCBPO00560 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 MBLAC2-202ENST00000514906 1936 ntBASIC12.79□□□□□ -0.36
SDCBPO00560 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
SDCBPO00560 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.79□□□□□ -0.36
SDCBPO00560 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.79□□□□□ -0.36
SDCBPO00560 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SDCBPO00560 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms