Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AGPAT5P1-201ENST00000455855 1019 ntBASIC18.2■□□□□ 0.5
COL5A3P25940 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC18.2■□□□□ 0.5
COL5A3P25940 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
COL5A3P25940 AC005586.2-201ENST00000563946 837 ntBASIC18.2■□□□□ 0.5
COL5A3P25940 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 AC010632.2-201ENST00000588369 1224 ntBASIC18.2■□□□□ 0.5
COL5A3P25940 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
COL5A3P25940 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL5A3P25940 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL5A3P25940 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A3P25940 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL5A3P25940 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A3P25940 RN7SL767P-201ENST00000493013 295 ntBASIC18.19■□□□□ 0.5
COL5A3P25940 ALG1L7P-201ENST00000502317 768 ntBASIC18.19■□□□□ 0.5
COL5A3P25940 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC18.19■□□□□ 0.5
COL5A3P25940 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC18.19■□□□□ 0.5
COL5A3P25940 VENTXP3-201ENST00000546480 773 ntBASIC18.19■□□□□ 0.5
COL5A3P25940 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC18.19■□□□□ 0.5
COL5A3P25940 SRP14-204ENST00000558720 780 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 SNORD3B-1-201ENST00000577988 758 ntBASIC18.19■□□□□ 0.5
COL5A3P25940 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC18.19■□□□□ 0.5
COL5A3P25940 HPX-213ENST00000615166 826 ntTSL 5 BASIC18.19■□□□□ 0.5
COL5A3P25940 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC18.19■□□□□ 0.5
COL5A3P25940 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC18.19■□□□□ 0.5
COL5A3P25940 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL5A3P25940 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL5A3P25940 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 PTGER4P2-201ENST00000328411 252 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 GRPEL2P1-201ENST00000453145 339 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 PTGER4P3-201ENST00000458150 252 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 FAM86B3P-203ENST00000523992 854 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 FOXN3-AS2-201ENST00000554071 1262 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 AP005264.5-201ENST00000590066 467 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 RARS-210ENST00000626454 177 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.18■□□□□ 0.5
COL5A3P25940 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.18■□□□□ 0.5
COL5A3P25940 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL5A3P25940 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 ZNF436-AS1-201ENST00000335648 2547 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
COL5A3P25940 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 MSANTD2P1-201ENST00000445341 1368 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.18■□□□□ 0.5
COL5A3P25940 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL5A3P25940 AC018442.1-201ENST00000421439 2061 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 AC106827.1-201ENST00000366454 431 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 BX679664.3-201ENST00000414070 555 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
COL5A3P25940 AC113935.1-201ENST00000471722 555 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC18.18■□□□□ 0.5
COL5A3P25940 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC18.18■□□□□ 0.5
COL5A3P25940 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.18■□□□□ 0.5
COL5A3P25940 RN7SL556P-201ENST00000582856 298 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 AC104506.1-201ENST00000609247 429 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 AC007950.2-201ENST00000615045 2347 ntBASIC18.18■□□□□ 0.5
COL5A3P25940 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A3P25940 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC18.17■□□□□ 0.5
COL5A3P25940 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL5A3P25940 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.17■□□□□ 0.5
COL5A3P25940 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms