Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AGGF1P1-201ENST00000509500 2073 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AC098614.1-201ENST00000368528 745 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AL035633.1-201ENST00000406139 838 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AP005018.1-201ENST00000525475 301 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AP001582.1-201ENST00000525856 295 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 ENPP7P5-201ENST00000541031 1031 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 BX539320.1-201ENST00000623759 877 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 CU634019.7-201ENST00000624153 1185 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 FP236241.2-201ENST00000624906 1185 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 PRSS30P-206ENST00000641773 873 ntBASIC15.49■□□□□ 0.07
PCDH9Q9HC56 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PCDH9Q9HC56 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 RN7SL692P-201ENST00000464677 288 ntBASIC15.48■□□□□ 0.07
PCDH9Q9HC56 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 KRT8P14-201ENST00000414254 1442 ntBASIC15.48■□□□□ 0.07
PCDH9Q9HC56 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
PCDH9Q9HC56 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms