Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
EPHB3P54753 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
EPHB3P54753 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
EPHB3P54753 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
EPHB3P54753 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.55■□□□□ 0.08
EPHB3P54753 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 MBLAC2-202ENST00000514906 1936 ntBASIC15.55■□□□□ 0.08
EPHB3P54753 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
EPHB3P54753 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.55■□□□□ 0.08
EPHB3P54753 ACTG1P2-201ENST00000415776 1125 ntBASIC15.55■□□□□ 0.08
EPHB3P54753 ACTG1P11-201ENST00000425411 1125 ntBASIC15.55■□□□□ 0.08
EPHB3P54753 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.55■□□□□ 0.08
EPHB3P54753 VDAC1P1-201ENST00000439229 848 ntBASIC15.55■□□□□ 0.08
EPHB3P54753 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 AC012618.1-201ENST00000461223 412 ntBASIC15.55■□□□□ 0.08
EPHB3P54753 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.55■□□□□ 0.08
EPHB3P54753 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
EPHB3P54753 AL160314.3-201ENST00000556041 767 ntBASIC15.55■□□□□ 0.08
EPHB3P54753 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.55■□□□□ 0.08
EPHB3P54753 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.55■□□□□ 0.08
EPHB3P54753 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.55■□□□□ 0.08
EPHB3P54753 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
EPHB3P54753 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
EPHB3P54753 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
EPHB3P54753 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
EPHB3P54753 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
EPHB3P54753 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.54■□□□□ 0.08
EPHB3P54753 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.54■□□□□ 0.08
EPHB3P54753 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC15.54■□□□□ 0.08
EPHB3P54753 AC006335.1-201ENST00000445200 547 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.54■□□□□ 0.08
EPHB3P54753 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.54■□□□□ 0.08
EPHB3P54753 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 RCC2P8-201ENST00000502779 1035 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 SCARNA21-201ENST00000517026 139 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 AC090857.1-201ENST00000527400 390 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.54■□□□□ 0.08
EPHB3P54753 AC009779.1-201ENST00000551138 283 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.54■□□□□ 0.08
EPHB3P54753 Z98259.2-201ENST00000641583 609 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
EPHB3P54753 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
EPHB3P54753 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.54■□□□□ 0.08
EPHB3P54753 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 AC126755.1-201ENST00000525846 6405 ntBASIC15.54■□□□□ 0.08
EPHB3P54753 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
EPHB3P54753 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
EPHB3P54753 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
EPHB3P54753 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
EPHB3P54753 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.53■□□□□ 0.08
EPHB3P54753 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.53■□□□□ 0.08
EPHB3P54753 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.53■□□□□ 0.08
EPHB3P54753 KRT8P19-201ENST00000551916 1455 ntBASIC15.53■□□□□ 0.08
EPHB3P54753 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
EPHB3P54753 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms