Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RFX3P48380 AC007787.1-201ENST00000588095 1583 ntBASIC14.17□□□□□ -0.14
RFX3P48380 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.17□□□□□ -0.14
RFX3P48380 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.17□□□□□ -0.14
RFX3P48380 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.17□□□□□ -0.14
RFX3P48380 ACE3P-201ENST00000423435 1973 ntBASIC14.17□□□□□ -0.14
RFX3P48380 AL158070.2-201ENST00000623713 1621 ntBASIC14.17□□□□□ -0.14
RFX3P48380 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
RFX3P48380 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.17□□□□□ -0.14
RFX3P48380 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.17□□□□□ -0.14
RFX3P48380 ELK1P1-201ENST00000485699 580 ntBASIC14.17□□□□□ -0.14
RFX3P48380 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 SPDYE22P-201ENST00000582158 798 ntBASIC14.17□□□□□ -0.14
RFX3P48380 AC138761.1-201ENST00000584393 385 ntBASIC14.17□□□□□ -0.14
RFX3P48380 CTBP2P3-201ENST00000585629 1255 ntBASIC14.17□□□□□ -0.14
RFX3P48380 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
RFX3P48380 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 AC139749.1-202ENST00000617529 3139 ntBASIC14.17□□□□□ -0.14
RFX3P48380 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
RFX3P48380 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.17□□□□□ -0.14
RFX3P48380 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFX3P48380 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.16□□□□□ -0.14
RFX3P48380 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RFX3P48380 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.16□□□□□ -0.14
RFX3P48380 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 AL442647.2-201ENST00000429864 857 ntBASIC14.16□□□□□ -0.14
RFX3P48380 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.16□□□□□ -0.14
RFX3P48380 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.16□□□□□ -0.14
RFX3P48380 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
RFX3P48380 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.16□□□□□ -0.14
RFX3P48380 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 AC093813.1-201ENST00000605066 256 ntBASIC14.16□□□□□ -0.14
RFX3P48380 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.16□□□□□ -0.14
RFX3P48380 AL645728.2-202ENST00000641679 227 ntBASIC14.16□□□□□ -0.14
RFX3P48380 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
RFX3P48380 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RFX3P48380 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.16□□□□□ -0.14
RFX3P48380 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFX3P48380 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms