Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 KRT43P-201ENST00000434019 910 ntBASIC14.18□□□□□ -0.14
SOX3P41225 AC244107.1-201ENST00000442033 332 ntBASIC14.18□□□□□ -0.14
SOX3P41225 AC012441.1-201ENST00000446669 685 ntBASIC14.18□□□□□ -0.14
SOX3P41225 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 AP001889.1-201ENST00000525414 633 ntBASIC14.18□□□□□ -0.14
SOX3P41225 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.18□□□□□ -0.14
SOX3P41225 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.18□□□□□ -0.14
SOX3P41225 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
SOX3P41225 AC017083.2-201ENST00000608069 979 ntBASIC14.18□□□□□ -0.14
SOX3P41225 AL022328.1-201ENST00000610050 478 ntBASIC14.18□□□□□ -0.14
SOX3P41225 BX539320.1-201ENST00000623759 877 ntBASIC14.18□□□□□ -0.14
SOX3P41225 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
SOX3P41225 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 ST20-AS1-201ENST00000560255 4223 ntBASIC14.18□□□□□ -0.14
SOX3P41225 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
SOX3P41225 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 AC015656.1-201ENST00000624209 3578 ntBASIC14.18□□□□□ -0.14
SOX3P41225 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SOX3P41225 INTS4P1-203ENST00000641008 3683 ntBASIC14.18□□□□□ -0.14
SOX3P41225 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
SOX3P41225 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 ZBED1P1-201ENST00000502364 1930 ntBASIC14.17□□□□□ -0.14
SOX3P41225 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SOX3P41225 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.17□□□□□ -0.14
SOX3P41225 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 ACKR1-201ENST00000368121 1240 ntBASIC14.17□□□□□ -0.14
SOX3P41225 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SOX3P41225 AC005229.1-201ENST00000392885 409 ntBASIC14.17□□□□□ -0.14
SOX3P41225 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.17□□□□□ -0.14
SOX3P41225 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SOX3P41225 AC022137.2-201ENST00000503482 481 ntBASIC14.17□□□□□ -0.14
SOX3P41225 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.17□□□□□ -0.14
SOX3P41225 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.17□□□□□ -0.14
SOX3P41225 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.17□□□□□ -0.14
SOX3P41225 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.17□□□□□ -0.14
SOX3P41225 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SOX3P41225 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 AC006504.5-208ENST00000588784 2401 ntBASIC14.16□□□□□ -0.14
SOX3P41225 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
SOX3P41225 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms