Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.01□□□□□ -0.17
COL5A1P20908 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
COL5A1P20908 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 LINC00634-202ENST00000505157 222 ntBASIC14.01□□□□□ -0.17
COL5A1P20908 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 AC007952.4-201ENST00000573866 637 ntBASIC14.01□□□□□ -0.17
COL5A1P20908 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.01□□□□□ -0.17
COL5A1P20908 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
COL5A1P20908 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.01□□□□□ -0.17
COL5A1P20908 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
COL5A1P20908 AC139712.1-201ENST00000378256 1875 ntBASIC14.01□□□□□ -0.17
COL5A1P20908 LINC01101-201ENST00000622953 1884 ntBASIC14.01□□□□□ -0.17
COL5A1P20908 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14□□□□□ -0.17
COL5A1P20908 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14□□□□□ -0.17
COL5A1P20908 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14□□□□□ -0.17
COL5A1P20908 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14□□□□□ -0.17
COL5A1P20908 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC14□□□□□ -0.17
COL5A1P20908 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14□□□□□ -0.17
COL5A1P20908 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14□□□□□ -0.17
COL5A1P20908 MIR645-201ENST00000385283 94 ntBASIC14□□□□□ -0.17
COL5A1P20908 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14□□□□□ -0.17
COL5A1P20908 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14□□□□□ -0.17
COL5A1P20908 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 RN7SL277P-201ENST00000481521 288 ntBASIC14□□□□□ -0.17
COL5A1P20908 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14□□□□□ -0.17
COL5A1P20908 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC14□□□□□ -0.17
COL5A1P20908 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC14□□□□□ -0.17
COL5A1P20908 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC14□□□□□ -0.17
COL5A1P20908 AC138466.4-201ENST00000623965 852 ntBASIC14□□□□□ -0.17
COL5A1P20908 AC148477.9-201ENST00000623974 539 ntBASIC14□□□□□ -0.17
COL5A1P20908 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14□□□□□ -0.17
COL5A1P20908 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
COL5A1P20908 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
COL5A1P20908 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14□□□□□ -0.17
COL5A1P20908 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14□□□□□ -0.17
COL5A1P20908 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
COL5A1P20908 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL5A1P20908 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 KRT17P5-201ENST00000332088 839 ntBASIC13.99□□□□□ -0.17
COL5A1P20908 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL5A1P20908 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL5A1P20908 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC13.99□□□□□ -0.17
COL5A1P20908 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC13.99□□□□□ -0.17
COL5A1P20908 AC010234.1-201ENST00000494599 870 ntBASIC13.99□□□□□ -0.17
COL5A1P20908 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC13.99□□□□□ -0.17
COL5A1P20908 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC13.99□□□□□ -0.17
COL5A1P20908 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.99□□□□□ -0.17
COL5A1P20908 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms