Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 CYMP-203ENST00000474680 1263 ntBASIC14.68□□□□□ -0.06
SIX3O95343 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 INGX-202ENST00000489074 768 ntBASIC14.68□□□□□ -0.06
SIX3O95343 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 AC123567.1-201ENST00000548294 1261 ntBASIC14.68□□□□□ -0.06
SIX3O95343 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.68□□□□□ -0.06
SIX3O95343 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SIX3O95343 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
SIX3O95343 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 AC093726.1-201ENST00000608064 963 ntBASIC14.68□□□□□ -0.06
SIX3O95343 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 AC008761.3-201ENST00000624803 892 ntBASIC14.68□□□□□ -0.06
SIX3O95343 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
SIX3O95343 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.68□□□□□ -0.06
SIX3O95343 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SIX3O95343 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SIX3O95343 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 AGGF1P1-201ENST00000509500 2073 ntBASIC14.67□□□□□ -0.06
SIX3O95343 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.67□□□□□ -0.06
SIX3O95343 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
SIX3O95343 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SIX3O95343 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SIX3O95343 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
SIX3O95343 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.67□□□□□ -0.06
SIX3O95343 AL442647.2-201ENST00000429864 857 ntBASIC14.67□□□□□ -0.06
SIX3O95343 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.67□□□□□ -0.06
SIX3O95343 SERBP1P5-201ENST00000510079 1181 ntBASIC14.67□□□□□ -0.06
SIX3O95343 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.67□□□□□ -0.06
SIX3O95343 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.67□□□□□ -0.06
SIX3O95343 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.67□□□□□ -0.06
SIX3O95343 AC092552.1-201ENST00000547243 906 ntBASIC14.67□□□□□ -0.06
SIX3O95343 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.67□□□□□ -0.06
SIX3O95343 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.67□□□□□ -0.06
SIX3O95343 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.67□□□□□ -0.06
SIX3O95343 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SIX3O95343 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.67□□□□□ -0.06
SIX3O95343 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.67□□□□□ -0.06
SIX3O95343 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms