Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM54Q9BYV2 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 AC002472.2-201ENST00000442739 958 ntBASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 AL359711.2-201ENST00000563105 872 ntBASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 MIR4745-201ENST00000577608 62 ntBASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 AL157414.3-201ENST00000624276 1954 ntBASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM54Q9BYV2 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AC236430.1-201ENST00000402231 743 ntBASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AL139094.1-201ENST00000405549 1188 ntBASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 TERF1P3-201ENST00000505638 1227 ntBASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 CHCHD2P3-201ENST00000603038 451 ntBASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AL355385.1-201ENST00000606123 409 ntBASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 PRSS30P-206ENST00000641773 873 ntBASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AC092053.3-201ENST00000641308 4975 ntBASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms