Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC11.68□□□□□ -0.54
CXCL1P09341 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 AP002414.3-201ENST00000589352 1468 ntBASIC11.68□□□□□ -0.54
CXCL1P09341 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 NME1-209ENST00000511355 1645 ntTSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 GOLGA2P9-201ENST00000596977 1937 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC11.67□□□□□ -0.54
CXCL1P09341 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 AC108751.1-201ENST00000490852 363 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 AC098859.1-201ENST00000502915 1238 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC11.67□□□□□ -0.54
CXCL1P09341 TCAP-202ENST00000578283 583 ntTSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 AC073389.1-201ENST00000595595 795 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC11.67□□□□□ -0.54
CXCL1P09341 AL161645.1-201ENST00000622716 1255 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 AC007064.4-201ENST00000637740 555 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC11.67□□□□□ -0.54
CXCL1P09341 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 AL354702.1-201ENST00000442006 1960 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 KHSRPP1-201ENST00000427983 1768 ntBASIC11.67□□□□□ -0.54
CXCL1P09341 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC11.67□□□□□ -0.54
CXCL1P09341 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CXCL1P09341 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms