Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PDLIM1O00151 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.41□□□□□ -0.1
PDLIM1O00151 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PDLIM1O00151 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
PDLIM1O00151 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 SELPLG-203ENST00000550948 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM1O00151 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
PDLIM1O00151 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM1O00151 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM1O00151 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM1O00151 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
PDLIM1O00151 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.4□□□□□ -0.1
PDLIM1O00151 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.4□□□□□ -0.1
PDLIM1O00151 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.4□□□□□ -0.1
PDLIM1O00151 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.4□□□□□ -0.1
PDLIM1O00151 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
PDLIM1O00151 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
PDLIM1O00151 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 AP3S2-216ENST00000617003 1561 ntBASIC14.39□□□□□ -0.11
PDLIM1O00151 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.39□□□□□ -0.11
PDLIM1O00151 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PDLIM1O00151 HLA-H-201ENST00000383620 1096 ntBASIC14.39□□□□□ -0.11
PDLIM1O00151 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.39□□□□□ -0.11
PDLIM1O00151 GHSR-202ENST00000427970 912 ntBASIC14.39□□□□□ -0.11
PDLIM1O00151 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 EEF1DP4-201ENST00000446006 880 ntBASIC14.39□□□□□ -0.11
PDLIM1O00151 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.39□□□□□ -0.11
PDLIM1O00151 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.39□□□□□ -0.11
PDLIM1O00151 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms