Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.11■□□□□ 0.33
ERCC4Q92889 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
ERCC4Q92889 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.11■□□□□ 0.33
ERCC4Q92889 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC17.11■□□□□ 0.33
ERCC4Q92889 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.11■□□□□ 0.33
ERCC4Q92889 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.11■□□□□ 0.33
ERCC4Q92889 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ERCC4Q92889 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.1■□□□□ 0.33
ERCC4Q92889 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.1■□□□□ 0.33
ERCC4Q92889 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 AC025678.2-201ENST00000562061 970 ntBASIC17.1■□□□□ 0.33
ERCC4Q92889 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
ERCC4Q92889 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 AL391069.4-201ENST00000609583 481 ntBASIC17.1■□□□□ 0.33
ERCC4Q92889 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ERCC4Q92889 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
ERCC4Q92889 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ERCC4Q92889 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC17.1■□□□□ 0.33
ERCC4Q92889 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
ERCC4Q92889 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ERCC4Q92889 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ERCC4Q92889 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ERCC4Q92889 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 HLA-K-203ENST00000430151 1046 ntBASIC17.09■□□□□ 0.33
ERCC4Q92889 AC114501.2-201ENST00000439631 535 ntBASIC17.09■□□□□ 0.33
ERCC4Q92889 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC4Q92889 GAPDHP40-201ENST00000505218 1006 ntBASIC17.09■□□□□ 0.33
ERCC4Q92889 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC4Q92889 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.09■□□□□ 0.33
ERCC4Q92889 AC008738.7-201ENST00000609744 511 ntBASIC17.09■□□□□ 0.33
ERCC4Q92889 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.09■□□□□ 0.33
ERCC4Q92889 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 AC004840.1-201ENST00000636359 365 ntBASIC17.09■□□□□ 0.33
ERCC4Q92889 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ERCC4Q92889 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.09■□□□□ 0.33
ERCC4Q92889 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.09■□□□□ 0.33
ERCC4Q92889 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ERCC4Q92889 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms