Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.93■□□□□ 0.14
LIG3P49916 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
LIG3P49916 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 KRT8P44-201ENST00000441609 1350 ntBASIC15.92■□□□□ 0.14
LIG3P49916 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.92■□□□□ 0.14
LIG3P49916 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 PHKG1P2-201ENST00000457537 863 ntBASIC15.92■□□□□ 0.14
LIG3P49916 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.92■□□□□ 0.14
LIG3P49916 DOC2GP-202ENST00000514950 1163 ntBASIC15.92■□□□□ 0.14
LIG3P49916 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
LIG3P49916 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
LIG3P49916 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.92■□□□□ 0.14
LIG3P49916 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LIG3P49916 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LIG3P49916 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 SPDYE19P-201ENST00000338590 713 ntBASIC15.91■□□□□ 0.14
LIG3P49916 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 AC190387.1-201ENST00000551683 408 ntBASIC15.91■□□□□ 0.14
LIG3P49916 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.91■□□□□ 0.14
LIG3P49916 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.91■□□□□ 0.14
LIG3P49916 SRD5A3P1-201ENST00000603021 949 ntBASIC15.91■□□□□ 0.14
LIG3P49916 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 AC004790.1-201ENST00000612686 536 ntBASIC15.91■□□□□ 0.14
LIG3P49916 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.91■□□□□ 0.14
LIG3P49916 AC097359.2-201ENST00000604992 2389 ntBASIC15.91■□□□□ 0.14
LIG3P49916 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LIG3P49916 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LIG3P49916 AC007541.1-201ENST00000570282 1469 ntBASIC15.91■□□□□ 0.14
LIG3P49916 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 Z97205.2-201ENST00000564697 1639 ntBASIC15.9■□□□□ 0.14
LIG3P49916 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms