Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 PCDHA1-201ENST00000378133 2726 ntBASIC17.48■□□□□ 0.39
COL4A5P29400 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
COL4A5P29400 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A5P29400 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A5P29400 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 NT5C-204ENST00000578337 582 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 RPS5-204ENST00000598098 536 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL4A5P29400 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 AC090386.2-201ENST00000623010 1039 ntBASIC17.48■□□□□ 0.39
COL4A5P29400 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.48■□□□□ 0.39
COL4A5P29400 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL4A5P29400 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL4A5P29400 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL4A5P29400 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A5P29400 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A5P29400 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 GNG10P1-201ENST00000452289 199 ntBASIC17.47■□□□□ 0.39
COL4A5P29400 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A5P29400 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A5P29400 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A5P29400 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC17.47■□□□□ 0.39
COL4A5P29400 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A5P29400 WASH3P-207ENST00000560956 1394 ntBASIC17.47■□□□□ 0.39
COL4A5P29400 LINC00244-201ENST00000625073 613 ntBASIC17.47■□□□□ 0.39
COL4A5P29400 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC17.47■□□□□ 0.39
COL4A5P29400 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL4A5P29400 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC17.47■□□□□ 0.39
COL4A5P29400 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL4A5P29400 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL4A5P29400 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC17.46■□□□□ 0.39
COL4A5P29400 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC17.46■□□□□ 0.39
COL4A5P29400 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
COL4A5P29400 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC17.46■□□□□ 0.39
COL4A5P29400 AC026470.1-201ENST00000478038 846 ntBASIC17.46■□□□□ 0.39
COL4A5P29400 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC17.46■□□□□ 0.39
COL4A5P29400 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC17.46■□□□□ 0.39
COL4A5P29400 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC17.46■□□□□ 0.39
COL4A5P29400 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL4A5P29400 AL118508.1-201ENST00000613502 2345 ntBASIC17.46■□□□□ 0.39
COL4A5P29400 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.46■□□□□ 0.39
COL4A5P29400 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
COL4A5P29400 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.46■□□□□ 0.39
COL4A5P29400 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL4A5P29400 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC17.46■□□□□ 0.39
COL4A5P29400 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
COL4A5P29400 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.46■□□□□ 0.38
COL4A5P29400 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL4A5P29400 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL4A5P29400 PTGER4P2-201ENST00000328411 252 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 PTGER4P3-201ENST00000458150 252 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 RN7SL23P-201ENST00000484055 275 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms