Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
GPC4O75487 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.15■□□□□ 0.02
GPC4O75487 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.15■□□□□ 0.02
GPC4O75487 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.15■□□□□ 0.02
GPC4O75487 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 AL442647.2-201ENST00000429864 857 ntBASIC15.15■□□□□ 0.02
GPC4O75487 VDAC1P7-201ENST00000462417 847 ntBASIC15.15■□□□□ 0.02
GPC4O75487 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.15■□□□□ 0.02
GPC4O75487 RPL13AP25-201ENST00000484130 612 ntBASIC15.15■□□□□ 0.02
GPC4O75487 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.15■□□□□ 0.02
GPC4O75487 AC092552.1-201ENST00000547243 906 ntBASIC15.15■□□□□ 0.02
GPC4O75487 AC190387.1-201ENST00000551683 408 ntBASIC15.15■□□□□ 0.02
GPC4O75487 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.15■□□□□ 0.02
GPC4O75487 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.15■□□□□ 0.02
GPC4O75487 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
GPC4O75487 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.15■□□□□ 0.02
GPC4O75487 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
GPC4O75487 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.15■□□□□ 0.02
GPC4O75487 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
GPC4O75487 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
GPC4O75487 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.14■□□□□ 0.01
GPC4O75487 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.14■□□□□ 0.01
GPC4O75487 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 MYCLP2-201ENST00000449268 967 ntBASIC15.14■□□□□ 0.01
GPC4O75487 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.14■□□□□ 0.01
GPC4O75487 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.14■□□□□ 0.01
GPC4O75487 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.14■□□□□ 0.01
GPC4O75487 TP53TG3HP-202ENST00000569755 579 ntBASIC15.14■□□□□ 0.01
GPC4O75487 SPDYE22P-201ENST00000582158 798 ntBASIC15.14■□□□□ 0.01
GPC4O75487 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.14■□□□□ 0.01
GPC4O75487 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.14■□□□□ 0.01
GPC4O75487 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 CICP14-201ENST00000629111 2732 ntBASIC15.14■□□□□ 0.01
GPC4O75487 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
GPC4O75487 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
GPC4O75487 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
GPC4O75487 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.14■□□□□ 0.01
GPC4O75487 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
GPC4O75487 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
GPC4O75487 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
GPC4O75487 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
GPC4O75487 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms