Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 KLF2P2-201ENST00000416807 1039 ntBASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 AP005019.2-201ENST00000615104 511 ntBASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 AP001267.2-201ENST00000532619 2086 ntBASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS29Q9UBQ0 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 GIMAP3P-201ENST00000495150 836 ntBASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 LINC02560-201ENST00000596379 459 ntBASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 AC055811.4-201ENST00000624039 1754 ntBASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS29Q9UBQ0 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 LRRC59-203ENST00000576448 1531 ntBASIC14.43□□□□□ -0.1
VPS29Q9UBQ0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms