Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
VPS13AQ96RL7 AC003102.2-201ENST00000589195 1469 ntBASIC14.45□□□□□ -0.1
VPS13AQ96RL7 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 GUSBP10-201ENST00000417412 665 ntBASIC14.45□□□□□ -0.1
VPS13AQ96RL7 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 TRMT112P3-201ENST00000580149 358 ntBASIC14.45□□□□□ -0.1
VPS13AQ96RL7 AC080013.5-201ENST00000607044 679 ntBASIC14.45□□□□□ -0.1
VPS13AQ96RL7 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.45□□□□□ -0.1
VPS13AQ96RL7 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 NME6-208ENST00000435684 599 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 BCRP4-201ENST00000506079 804 ntBASIC14.45□□□□□ -0.1
VPS13AQ96RL7 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 AC004466.2-201ENST00000614749 516 ntBASIC14.45□□□□□ -0.1
VPS13AQ96RL7 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS13AQ96RL7 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 OR10N1P-201ENST00000392758 869 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 AC091951.1-201ENST00000512854 2465 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 BX088651.3-201ENST00000418155 352 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 MAGEA7P-201ENST00000436482 942 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 AL451000.1-201ENST00000451300 1186 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 KNOP1P1-201ENST00000542108 989 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 PCDHA1-201ENST00000378133 2726 ntBASIC14.44□□□□□ -0.1
VPS13AQ96RL7 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
VPS13AQ96RL7 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AL391005.1-201ENST00000623953 2435 ntBASIC14.43□□□□□ -0.1
VPS13AQ96RL7 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 RN7SL173P-201ENST00000461853 292 ntBASIC14.43□□□□□ -0.1
VPS13AQ96RL7 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AP000769.1-203ENST00000637245 208 ntBASIC14.43□□□□□ -0.1
VPS13AQ96RL7 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 WASH3P-207ENST00000560956 1394 ntBASIC14.43□□□□□ -0.1
VPS13AQ96RL7 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms