Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 FKBP4P6-201ENST00000457486 1332 ntBASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NKX2-3Q8TAU0 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 CD8B2-202ENST00000417670 633 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AL008707.1-201ENST00000422498 534 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 CNN2P10-201ENST00000443067 918 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AC097724.1-201ENST00000609581 426 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AL096828.3-201ENST00000615354 462 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AC097359.2-201ENST00000604992 2389 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 AC092978.1-202ENST00000637590 1327 ntBASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
NKX2-3Q8TAU0 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 RN7SKP175-201ENST00000408472 289 ntBASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 AC007292.2-201ENST00000593524 1812 ntBASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 LINC00552-201ENST00000625151 2579 ntBASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
NKX2-3Q8TAU0 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 FAM8A4P-201ENST00000435433 1213 ntBASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CHMP1AP1-201ENST00000445563 662 ntBASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 COX5BP1-201ENST00000507622 393 ntBASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms