Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CLRN1P58418 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
CLRN1P58418 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CLRN1P58418 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.5□□□□□ -0.25
CLRN1P58418 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.5□□□□□ -0.25
CLRN1P58418 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CLRN1P58418 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.5□□□□□ -0.25
CLRN1P58418 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CLRN1P58418 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.5□□□□□ -0.25
CLRN1P58418 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CLRN1P58418 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.5□□□□□ -0.25
CLRN1P58418 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.5□□□□□ -0.25
CLRN1P58418 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CLRN1P58418 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.49□□□□□ -0.25
CLRN1P58418 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 LRRC59-203ENST00000576448 1531 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.49□□□□□ -0.25
CLRN1P58418 AL390755.1-201ENST00000623716 2027 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.49□□□□□ -0.25
CLRN1P58418 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.49□□□□□ -0.25
CLRN1P58418 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 RNU1-114P-201ENST00000365297 166 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.49□□□□□ -0.25
CLRN1P58418 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.49□□□□□ -0.25
CLRN1P58418 AL139094.1-201ENST00000405549 1188 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 AL162726.2-201ENST00000438986 1017 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 AC114812.1-204ENST00000449669 728 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.49□□□□□ -0.25
CLRN1P58418 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 ELK1P1-201ENST00000485699 580 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
CLRN1P58418 AC190387.1-201ENST00000551683 408 ntBASIC13.49□□□□□ -0.25
CLRN1P58418 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.49□□□□□ -0.25
CLRN1P58418 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.49□□□□□ -0.25
CLRN1P58418 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.49□□□□□ -0.25
CLRN1P58418 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.49□□□□□ -0.25
CLRN1P58418 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.49□□□□□ -0.25
CLRN1P58418 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CLRN1P58418 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.49□□□□□ -0.25
CLRN1P58418 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 KRT8P14-201ENST00000414254 1442 ntBASIC13.48□□□□□ -0.25
CLRN1P58418 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.48□□□□□ -0.25
CLRN1P58418 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
CLRN1P58418 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLRN1P58418 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms